RNA id: TU68339


Basic Information

Item Value
RNA id TU68339
length 1275
lncRNA type sense_over
GC content 0.38
exon number 2
gene id G57811
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 501545 ~ 708236 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ACAGGAGCAAGAGACACAGTACAGCACTGATACTTTCCAAGCAGCGCCGCCGGTGTCCTGCGCATCATTCCAGGTAACATCTATTGCATTTCAGCCCACATTAAGAACTGCTAACTCTACTCAAAACATGCTAACCCTAGCTAACTAGCACCAGTAATTCATCTTGCAAATAATAAGGTGAACTAAAACTGAAATTGGACAAGATGTgggtttgtttgtctttaattATCCTTAATTCATTCCTCATTATCTCCATCACTTACCGCTGTcctgtttcctcttttcctgctcttcttgttttctcttgtgCTTCTGGCTGCCAGATAGGTACAGTAtgtcctcttcatcttcaggaGTTAAAGCTCGTGCGACTCGAGTGTGGGGGGTGGCGCAGAAGCATAAAGTCACAAACGAGACAGCGCCCCTAAAGGGGGTTGCTGAGATGTTGCTGCGCATTATTTTAAGATGAAAATTTCTGATGATTTAAAAGATCAGCCCTCAGGGGCCTCTCAGAATGCGGGGCAGCAGGTAATTGCTGGCCTTGCCTGCTCTGTAGATACGCCTCTGCGTGCATGGATATTGCTACACAACAACACTGCaactattttgtttactttattacGGTAACTAGATcagaaaatatgtataaatcCAGATAGTTACTCACTGTTTTACAAATACATCTTTAGAATAAACTTTCTGCAGTATATAAATCTTAAGACTAAATagccaaatataaaaaaatgcctTCACACCCATGCATTCACaaatagattaataaaaataaattatacgcTAATATCACTAGTCTCAAAGTTACAAATTAAAAGAGATAGTTTACCCCAAAATGAAACTTGTCATAATATACACACTCTTATTTTGTTCCAAACCTGTTTGACTTTTATAAGGAGATGTAAGGCAGAACGTTAAGAGCCTCAGTCACCATTCACTATCACTGCCTCTTTCTTCTATAAAATACATGAATGGTGAGGAATGGTGTTCCACAAAAGAAACACATACAGGTGTGGAACAACATTAGTGTCAGTAGATCACAGGATTTTTAAACTCTACCTtacacagtaaacactttataaataaatgttacccTTGAAAACAGAGCACAGAGAAATATAGTGgataaattattttcctttgcagttaacatttatttctgaagtaGGGCAAGTTCTTTGCTCTTGCAGTATTCAGTTGGTCCCTTTGTTATGTTTCAATACACCTGAAGAGAACTTGGTGGTAGTCAGCCATCTACACAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU68359 lncRNA downstream 3305 640677 ~ 692268 (-) True G57823
TU68275 lncRNA downstream 21085 600626 ~ 674488 (-) True G57761
TU68377 lncRNA downstream 21850 672869 ~ 673723 (-) True G57837
TU68376 lncRNA downstream 22776 672019 ~ 672797 (-) True G57836
TU68369 lncRNA downstream 64265 618285 ~ 631308 (-) False G57831
TU68224 lncRNA upstream 1447 709683 ~ 761025 (-) False G57733
TU68381 lncRNA upstream 26685 734921 ~ 738411 (-) True LOC117597026
XR_004577973.1 lncRNA upstream 29933 738169 ~ 740709 (-) False LOC117597026
TU68382 lncRNA upstream 31783 740019 ~ 740760 (-) False LOC117597026
TU68383 lncRNA upstream 31783 740019 ~ 748267 (-) False LOC117597026
XM_034303482.1 mRNA downstream 198010 347059 ~ 497563 (-) False LOC117597012
XM_034303484.1 mRNA downstream 198769 347059 ~ 496804 (-) True LOC117597012
XM_034303497.1 mRNA downstream 243880 387311 ~ 451693 (-) False LOC117597013
XM_034303491.1 mRNA downstream 243882 395440 ~ 451691 (-) False LOC117597013
XM_034303496.1 mRNA downstream 247002 395440 ~ 448571 (-) False LOC117597013
XM_034303500.1 mRNA upstream 2123 710359 ~ 719607 (-) True LOC117597015
XM_034303499.1 mRNA upstream 2129 710365 ~ 719607 (-) False LOC117597015
XM_034303498.1 mRNA upstream 139837 848073 ~ 857200 (-) True LOC117597014
XM_034303472.1 mRNA upstream 155142 863378 ~ 886395 (-) False dis3l2
XM_034303471.1 mRNA upstream 155142 863378 ~ 886350 (-) False dis3l2
TU68368 other downstream 81330 612243 ~ 614243 (-) True G57830
TU68328 other downstream 198721 448725 ~ 496852 (-) False LOC117597012
TU68285 other downstream 397117 290510 ~ 298456 (-) False eif2b5
TU67777 other downstream 597456 95428 ~ 98117 (-) False LOC117596995
TU68254 other upstream 25319 733555 ~ 734771 (-) True G57740
TU68216 other upstream 131196 839432 ~ 856952 (-) False G57733
TU68413 other upstream 333541 1041777 ~ 1048841 (-) False G57868
TU68836 other upstream 984090 1692326 ~ 1692997 (-) True G58190
trnav-cac_1 other upstream 1291742 1999978 ~ 2000050 (-) True trnav-cac_1

Expression Profile