RNA id: TU68349


Basic Information

Item Value
RNA id TU68349
length 2427
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id G57818
representative False

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 553769 ~ 599202 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gcAACAAACCCCCACAATCCTAAACCTTTTGACTCCTTTCACCAAAATGACTCATTCAGGCCAGTAGGGGTCAGTGTTGTCTTTAATTTACCTGCTGCTGAGGTCTTTATTCTGGAGTTCAGTAGATAAACACGACTACACTGAGGAGAGACATGTAGCTACTGTAAATGGCAATAAAGCCAACtgttaaagtgttatttaaatacagagagacatataattaaattaaaaaaacattattatgagTGATTACTGAAAAGTATTAAACATTCTGTATCACTTTATTAAAGAGTCTGGGCTGATGCTGAAACGTGTTCTTTTGCATTAGTGAATACAGAGAcatatttgattaaataaataacaaataataagccatgaagaaagagaatatttatatggaacaagaagtgatgaagaagtgatattaatatctgaaAGGAATAAACTGTAAGACTGGCAGCTGAAGTCACTGGAGTCTGAACCACAGATCTGTGAGAATGAAATGCGCATGCGTGAGTTTTTGACACTCTTTTGATACAAGAGTTCAGCATGAACAGTACAATATGCGATTTGAGGTTGAAATGAAAACAGTTGAAAATAGGCCAGTTTATGATTTtgatgcgcacacacatacacagcccTCCACATAAATCGCGTTTACACAATTTAAAGATTCAAATTGTGTTCAATTGAATTCACCCAAACTGTGATCAGTTAGTTCCAAAAGcctttattattacattaccaTTGTCAGGCAGTAGAGGACGCTCATGCACAGTGTCTTCAGTGTTTTCTTACCATTTTCCTGGAAGGCCCCCAACACTGCATGGTGGATGTCTACCGCATCTTAAACACCCATTTCAGGACTTGAAGCAATTTCCTAGTAATCTGACGAGTTGAATCAGGTCTGTTAGATTAGGGAATGTGGAGTGATGGATCCAACCGCTTTCACTTTCAAACAGCATTCACAAGTGTGTTTAAGCACATTATCAAGATCACACACAGATATCATCTGACAAATGTTTGCAAACCTACATGTGCTGAATCATGTTGTGcttaatctgtatttatttacacatgacAATTTTACAGTACAGTCATAAATTTACCAAATACTACCCCGTCTCTGAAAGGAACAGTGGGGACCAAACATTGCATAATGTCCATCTGTACAATATGCTATAAGGGCTCTGAATAGTGGCCAAACTGTTATGTCACACGAATGGAGTGACAAAACACTCCTTTACTCGGCTCACTGGAAAAAACAATAGGCAGTCAGGTAAGACTGTATACAAATATGCAATGGTAAATAACGAAAAATCTTTCAGAAGCATTGTTGGGCCATAATCTACTATTTCAATTATACAATGGGCAaagagttttattaaaataggaacaacaatagaaaaaaaaaaaaaacaacacagttgGAGTACAATGGAGTGAGAGGGGAGAACTGCAGTTTGGAGCCTGAATGTGATGGTGAAATAGCTCCAGCTTCACGCACACAGTATTTCTGCAAGAGCTGGCAACAAAACACTTCATTAGAAATAATGTCATTGACCTCCTGgggggaataaaaaaaaaggacacccAGAGCTCCCCATCAAAAGCAATAACATTGCTGAAAACTCCAATATACAAAACAGTGGTAGTCAGAGATGGAGTCAGGGACGTCAGTCATGGAATGTGTCTTAAATTAAGAGAGCCTTGGTGAGCAGCTGCAGCACTATCCAATGGAGATAAATAATCAGCTGCATACTGGAAACGTTTAAATGCTGGTTTCACTTGGCTGCTATTTAGATATTAAAAGTAAAGGCTGAGATTTCCTTGAGTCGCCAATGTTTTTCAGCAGgagtgctgttgtgtgtgtctccatGGTTTAAGCATGCTGGTGGAGGAATAGTCTGAAATGTTGATGGCAGACGCGTTGACGTGTCTGGAGCAGTCAAATGGGGTATCTATGTATAGATATCTATGGGAATAACTAGTAGCCAATTAGCTTGACTTGTAACCCATTTTGCTGTGGACATTCTGCTAAGAGAGGCAGGTTGTTCTACCTTTTCAGGCATCTTGCTTCTCCCTTGTGCGCACACACTCACGAATAGCCTTTGTTGGACTGCTGTACGGAGACGTCACTGCGTATGTGGTGCGGTTCCTTTCACTTCATACCAGCCCCATTCAACTGCACACCACTGCTGAATGTATATAGGGGAAACACTGCTTTGTGCCATTCACCTGCCACCCTCTAACACTGATACTTGGACCTTCCAAACCAGCCAAATGTGTTGAGGAAATCCTTAACAGACGAACACCAGCAAAAATAATggtacatcaaaaaaaaaaaaaaaaatcagtaaacaaTAGGGCTGCAATGGTACGTGTATCCGTACCAAACTGAATGGATACAGGTACACACAAGGACAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU68277 lncRNA downstream 5613 354007 ~ 549005 (-) True G57763
TU68213 lncRNA downstream 10658 441299 ~ 543960 (-) False G57733
TU68230 lncRNA downstream 16520 521986 ~ 538098 (-) False G57733
XR_004577965.1 lncRNA downstream 16897 535865 ~ 537721 (-) True LOC117597020
TU68338 lncRNA downstream 35633 492652 ~ 518985 (-) True G57810
TU68366 lncRNA upstream 420 599622 ~ 600276 (-) True G57828
TU68275 lncRNA upstream 1424 600626 ~ 674488 (-) True G57761
TU68369 lncRNA upstream 19083 618285 ~ 631308 (-) False G57831
TU68370 lncRNA upstream 19083 618285 ~ 742153 (-) True G57831
TU68371 lncRNA upstream 19083 618285 ~ 740842 (-) False G57831
XM_034303482.1 mRNA downstream 57055 347059 ~ 497563 (-) False LOC117597012
XM_034303484.1 mRNA downstream 57814 347059 ~ 496804 (-) True LOC117597012
XM_034303497.1 mRNA downstream 102925 387311 ~ 451693 (-) False LOC117597013
XM_034303491.1 mRNA downstream 102927 395440 ~ 451691 (-) False LOC117597013
XM_034303496.1 mRNA downstream 106047 395440 ~ 448571 (-) False LOC117597013
XM_034303503.1 mRNA upstream 100847 700049 ~ 704378 (-) True LOC117597018
XM_034303500.1 mRNA upstream 111157 710359 ~ 719607 (-) True LOC117597015
XM_034303499.1 mRNA upstream 111163 710365 ~ 719607 (-) False LOC117597015
XM_034303498.1 mRNA upstream 248871 848073 ~ 857200 (-) True LOC117597014
XM_034303472.1 mRNA upstream 264176 863378 ~ 886395 (-) False dis3l2
TU68328 other downstream 57766 448725 ~ 496852 (-) False LOC117597012
TU68285 other downstream 256162 290510 ~ 298456 (-) False eif2b5
TU67777 other downstream 456501 95428 ~ 98117 (-) False LOC117596995
TU68368 other upstream 13041 612243 ~ 614243 (-) True G57830
TU68378 other upstream 84286 683488 ~ 746031 (-) True G57838
TU68254 other upstream 134353 733555 ~ 734771 (-) True G57740
TU68216 other upstream 240230 839432 ~ 856952 (-) False G57733
TU68413 other upstream 442575 1041777 ~ 1048841 (-) False G57868

Expression Profile