RNA id: TU68355


Basic Information

Item Value
RNA id TU68355
length 831
lncRNA type inter_gene
GC content 0.43
exon number 3
gene id G57821
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 559634 ~ 618855 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CACTCTTTGCTCTCTAACAGATTCAGGGATAACTATTCTAACTAGCTGTTATCTAACgataaacattaactaaagctggCTACATAAAATACCACTAATGACTAGATTCATGAGAGGTCAGCTGATGCGTTAACACGTCACAGAAATGCAGTGATGTCATCAGCTTCCCAGCGAGTGTGTTTTGGGAAACAGTGAAATGACAGCAGCAGGAGCTTATGGCAGCGTCGCAGCTCTCTACTTCAGCGGCGCTGGCGTGACAGACACTGACCTGCTGACAGCAGGTGATCTACCTGAGGGAGGACCTGAGCCACACCAGAAGTCGTCTTTGACGATCaaacacGGAGTGACCAATAATGTCTCAAGCACCATCACCCTCCAATAATTCTCTAAGTTCTGTTTACTGTgaaaaatatgcgttttcatTCGTGTTGGAATCGACCCGTACGACTGACTTTCATCTGTGGAGCACAGAATGTGTTATTAATAGGATCAGctgttatttctgtataattctAGAGGTTACGTGTGTAAGACttgacatttttataaatgagcCACTGAAATACAGTTTCACTGTGTAactgatgtctttttcttttaggGAGGAACTCCTCAGCAGAGCCACAGCACAGCACTGAATGCTAAAGGCTTTCCCATGTAGAAcactgattacaattttatacCTTTGTAAGCTTTTTGTATCTCAGCAGAGAGGATTTGTAAATGCGTGGATGGAACCTACATGGTTTTCTGGGAGCCCCAGTTAAAGACATCGAGAACTTACAGATGTTGGCCTTAACGTGTCAGCGTGGATAGACGTCTATTCCAGTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU68277 lncRNA downstream 10629 354007 ~ 549005 (-) True G57763
TU68213 lncRNA downstream 15674 441299 ~ 543960 (-) False G57733
TU68230 lncRNA downstream 21536 521986 ~ 538098 (-) False G57733
XR_004577965.1 lncRNA downstream 21913 535865 ~ 537721 (-) True LOC117597020
TU68338 lncRNA downstream 40649 492652 ~ 518985 (-) True G57810
TU68364 lncRNA upstream 13121 574040 ~ 808757 (-) True G57826
TU68365 lncRNA upstream 20915 581834 ~ 582438 (-) True G57827
TU68265 lncRNA upstream 30808 591727 ~ 799519 (-) True G57751
TU68366 lncRNA upstream 38703 599622 ~ 600276 (-) True G57828
TU68275 lncRNA upstream 39707 600626 ~ 674488 (-) True G57761
XM_034303482.1 mRNA downstream 62071 347059 ~ 497563 (-) False LOC117597012
XM_034303484.1 mRNA downstream 62830 347059 ~ 496804 (-) True LOC117597012
XM_034303497.1 mRNA downstream 107941 387311 ~ 451693 (-) False LOC117597013
XM_034303491.1 mRNA downstream 107943 395440 ~ 451691 (-) False LOC117597013
XM_034303496.1 mRNA downstream 111063 395440 ~ 448571 (-) False LOC117597013
XM_034303503.1 mRNA upstream 139130 700049 ~ 704378 (-) True LOC117597018
XM_034303500.1 mRNA upstream 149440 710359 ~ 719607 (-) True LOC117597015
XM_034303499.1 mRNA upstream 149446 710365 ~ 719607 (-) False LOC117597015
XM_034303498.1 mRNA upstream 287154 848073 ~ 857200 (-) True LOC117597014
XM_034303472.1 mRNA upstream 302459 863378 ~ 886395 (-) False dis3l2
TU68328 other downstream 62782 448725 ~ 496852 (-) False LOC117597012
TU68285 other downstream 261178 290510 ~ 298456 (-) False eif2b5
TU67777 other downstream 461517 95428 ~ 98117 (-) False LOC117596995
TU68368 other upstream 51324 612243 ~ 614243 (-) True G57830
TU68378 other upstream 122569 683488 ~ 746031 (-) True G57838
TU68254 other upstream 172636 733555 ~ 734771 (-) True G57740
TU68216 other upstream 278513 839432 ~ 856952 (-) False G57733
TU68413 other upstream 480858 1041777 ~ 1048841 (-) False G57868

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU431657 True 308 lncRNA 0.40 1 CI01000184 288748 ~ 289055 (-)
mexican tetra (Astyanax mexicanus) TU431657 False 735 lncRNA 0.40 2 NW_019172866.1 1001755 ~ 1054327 (-)