RNA id: TU68356


Basic Information

Item Value
RNA id TU68356
length 1356
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id G57822
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 558894 ~ 740486 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

caggccttctcgaccaacatcagtgtgtgacctcaccaatgcgcttttggaagaatggtcaaaaattcctataaacacactcctcaaccttgtggacagccttcccagaagagttgaagctgtaatagctgcaaaaggtggaccgacatcatattgaaccttatgggttaggaatgggatggcacttaagttcatatgtgagtcaaggcaggtgagcgaatacttttggtaatatagtgtaagtGAGGCAGGCATTGAATTGGAGGGCGAAGAGGAAACAGGGGGTGATGGTTCAGATGAGATTCTGGACAGGGTCCTGATTGGAACAGCCGATGAAGGGCGGGGGCAAATGAGCACAGAGGAGGCTGACATGTGGACAGAAGAAACAAGTAATGGAGAGGGAGTGCCACTCAAGGGCCCAACCCTCCAAGGTATCATAGAGGTGCAGTTATGGGAACGCTCCTGCTACAAGATGAGATGCTCTGGAATCGGTTTCACTGTTTCTGAACTGTAGGATTTTTATTGCAGGTTTTCTGGGAGCCCCAGTTAAAGACATCGAGAACTTACAGATGTTGGCCTTAACGTGTCAGCGTAGATAGACGTCTATTCCAGTCCTGTCTACACCACACCAGACTTCTCTCTGCATTGTGTAGATGGCTGACTACCACCAAGTTCTCTTCAGGTGTATTGAAACATAACAAAGGGACCAACTGAATACTGCAAGAGCAAAGAACTTGCCTtacttcagaaataaatgttaactgcaaaggaaaataatttatctactatatttctctgtgctctgttttcaagggtaacatttatttataaagtgtttactgtgtaAGGTATAGTTTAAAAATCCTGTGATCTACTGACACTAATGTTGTTCCACACCTGTATGTGTTTCTTTTGTGGAACACCATTCCTCACCTTTCATGTATTTTATAGAAGAAAGATGCAGTGATAGTGAATGGTGACTGAGGCTCTTAACGTTCTGCCTTACATCTCCTTATAAAAGTCAGACAGGTTTGGAACAAAATAAGAGTGTGTATATTATGACAAGTTTCATTTTGGGGTAAACTGTCTCTTTTGATATTAgcgtataatttatttttattaatctatttGTGAATGCATGGGTGTGAAGGCATTTTTCTATATTTGGCTATTTAGTCTTAAGATTTATATACTGCAGAAAGTTTATTCTAAAGATGTATTTGTAAAACAGTGAGTAACggaatgtgatgtgtgtttaaaaattaatatatatatatgtatatatatatataaatatatatcagctgatttatctatttatttatttgagtgtTTTGCGAGTTTAAAACAAGTAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU68277 lncRNA downstream 9889 354007 ~ 549005 (-) True G57763
TU68213 lncRNA downstream 14934 441299 ~ 543960 (-) False G57733
TU68230 lncRNA downstream 20796 521986 ~ 538098 (-) False G57733
XR_004577965.1 lncRNA downstream 21173 535865 ~ 537721 (-) True LOC117597020
TU68338 lncRNA downstream 39909 492652 ~ 518985 (-) True G57810
TU68369 lncRNA upstream 7922 618285 ~ 631308 (-) False G57831
TU68370 lncRNA upstream 7922 618285 ~ 742153 (-) True G57831
TU68371 lncRNA upstream 7922 618285 ~ 740842 (-) False G57831
TU68372 lncRNA upstream 9342 619705 ~ 620138 (-) True G57832
TU68359 lncRNA upstream 30314 640677 ~ 692268 (-) True G57823
XM_034303482.1 mRNA downstream 61331 347059 ~ 497563 (-) False LOC117597012
XM_034303484.1 mRNA downstream 62090 347059 ~ 496804 (-) True LOC117597012
XM_034303497.1 mRNA downstream 107201 387311 ~ 451693 (-) False LOC117597013
XM_034303491.1 mRNA downstream 107203 395440 ~ 451691 (-) False LOC117597013
XM_034303496.1 mRNA downstream 110323 395440 ~ 448571 (-) False LOC117597013
XM_034303503.1 mRNA upstream 89686 700049 ~ 704378 (-) True LOC117597018
XM_034303500.1 mRNA upstream 99996 710359 ~ 719607 (-) True LOC117597015
XM_034303499.1 mRNA upstream 100002 710365 ~ 719607 (-) False LOC117597015
XM_034303498.1 mRNA upstream 237710 848073 ~ 857200 (-) True LOC117597014
XM_034303472.1 mRNA upstream 253015 863378 ~ 886395 (-) False dis3l2
TU68328 other downstream 62042 448725 ~ 496852 (-) False LOC117597012
TU68285 other downstream 260438 290510 ~ 298456 (-) False eif2b5
TU67777 other downstream 460777 95428 ~ 98117 (-) False LOC117596995
TU68368 other upstream 1880 612243 ~ 614243 (-) True G57830
TU68378 other upstream 73125 683488 ~ 746031 (-) True G57838
TU68254 other upstream 123192 733555 ~ 734771 (-) True G57740
TU68216 other upstream 229069 839432 ~ 856952 (-) False G57733
TU68413 other upstream 431414 1041777 ~ 1048841 (-) False G57868

Expression Profile