RNA id: TU68364


Basic Information

Item Value
RNA id TU68364
length 1358
lncRNA type read_through
GC content 0.35
exon number 2
gene id G57826
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 574040 ~ 808757 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CAGATCCACAGTTTGTTCAAAACAAGTTTCACATTACATTTATctgtattacaaaataaaatatgaacacgaatgtaatataaaatacaaattttattatCCATGTACAAAATGTCTtctgtaacaaacacaaaacatagaATTTATATTGTACATAAAAACAAGCCATGCAAGTAAAAGCTAACTGTGAACAAGTCTCCTTGATCATTGTAGGCAGCGTGATCTAAAGCTGTCCACTTGCTCACTATATAATACTGTAATTAGTGAAAAGTTCCCTGCTGTCACTCATCAGACACATCGTTAGATTGGAAAGACATCAGTGTTACAGTATTACACACTGTGTTTATAAACACATCTCCTCCAATCACTTGCAGTTAAACCATTCTGACTTTCATCTCCCAGTTCACGCCCcaatgtgttgtgtgatgatCAGCTGTTGCCTGCTTCTTTACACTTCAACAACGCTCTGCACCCGTGTGAAAGGAGGAGGCAGTAAACTGTGTTTATCATTAAAATTTCCAGAAGATGcaatacctttaaaaaaaatcacaactgtttattacagtaCGTCTCCTTGTTGTGTCAGCACCTTTAGTGGTGTACTATTGTACATacagctacactacactaccaTTTCTGACTCTTAATGAAATGGTCATTTTCATGCCAGTCTGTTTAAACATTCTGCTtgtcaattaattaaattaatttaattaatgctacgctccctccactggctttctGTATGCTTAGATCCTCCCTCACAATCTCTAGTCATGATGCTACAGATAACCCTCTCAAAAGACTACACTTAGAGTATGTtattcttctacttcttctcaTGTGCACTGAACATCTTGCAGTGAAATTAACTGAAAAAGAGCCTGTATAAACAGACTGCCATGAAAACGACCACTTAGTTCACATTAgtcagaaatgataatgtagtCTCTACCAGTGAAAGtatttcatgctttttatcttttaaaatgtatttaaaataaaatattgtgtcTCTTCAACATGTAAAAAGCACCAGTATTTAGTACACTTTAAGACGTCACTTCATCAgtatataaatcatttacatttacaataaaacagttAGGTAGGTAAGGTGATGCTGGTAAAACCTGTGATGGCTATTATTTTGCTATttcacatctagatgtaaatttcaggaaattaaagctgaaattctgatctatcgtctcatattcatcttttgatctcaaaaccCAACTGTCATCAGTGTttagcaaaaacaacagaatgggTCTTGCTGTTCCAGgactttcagaggagactgtataTAGAACTGAAGTGGGCATTTTTTTGTGACTGGCTGTCAGTCTTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU68355 lncRNA downstream 13121 559634 ~ 560919 (-) True G57821
TU68277 lncRNA downstream 25035 354007 ~ 549005 (-) True G57763
TU68213 lncRNA downstream 30080 441299 ~ 543960 (-) False G57733
TU68230 lncRNA downstream 35942 521986 ~ 538098 (-) False G57733
XR_004577965.1 lncRNA downstream 36319 535865 ~ 537721 (-) True LOC117597020
TU68389 lncRNA upstream 13493 822250 ~ 825864 (-) True G57848
TU68391 lncRNA upstream 14023 822780 ~ 824304 (-) True G57849
TU68393 lncRNA upstream 18564 827321 ~ 841661 (-) True G57850
TU68256 lncRNA upstream 48990 857747 ~ 861437 (-) True G57742
TU68404 lncRNA upstream 100760 909517 ~ 910029 (-) True G57861
XM_034303482.1 mRNA downstream 76477 347059 ~ 497563 (-) False LOC117597012
XM_034303484.1 mRNA downstream 77236 347059 ~ 496804 (-) True LOC117597012
XM_034303497.1 mRNA downstream 122347 387311 ~ 451693 (-) False LOC117597013
XM_034303491.1 mRNA downstream 122349 395440 ~ 451691 (-) False LOC117597013
XM_034303496.1 mRNA downstream 125469 395440 ~ 448571 (-) False LOC117597013
XM_034303498.1 mRNA upstream 39316 848073 ~ 857200 (-) True LOC117597014
XM_034303472.1 mRNA upstream 54621 863378 ~ 886395 (-) False dis3l2
XM_034303471.1 mRNA upstream 54621 863378 ~ 886350 (-) False dis3l2
XM_034303473.1 mRNA upstream 54621 863378 ~ 886251 (-) True dis3l2
XM_034303352.1 mRNA upstream 116277 925034 ~ 933915 (-) True LOC113524111
TU68328 other downstream 77188 448725 ~ 496852 (-) False LOC117597012
TU68285 other downstream 275584 290510 ~ 298456 (-) False eif2b5
TU67777 other downstream 475923 95428 ~ 98117 (-) False LOC117596995
TU68216 other upstream 30675 839432 ~ 856952 (-) False G57733
TU68413 other upstream 233020 1041777 ~ 1048841 (-) False G57868
TU68836 other upstream 883569 1692326 ~ 1692997 (-) True G58190
trnav-cac_1 other upstream 1191221 1999978 ~ 2000050 (-) True trnav-cac_1
TU69291 other upstream 1262267 2071024 ~ 2083929 (-) False G58534

Expression Profile