RNA id: TU68365


Basic Information

Item Value
RNA id TU68365
length 487
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id G57827
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 581834 ~ 582438 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

cctgtatagtcccgcgtggtgcgcgtcggtacccttactcccgtatagtcccgcgtggtgcgcgtcggtaccgttactcctgtatagtcccgcgtggtgcgcgtcggtaccgttactcctgATGTGTAATGATCTGTGTGGTTCAGACTCCAGTGACTTCAGCTGCCAGTCTTACAGTTTATTCCTttcagatattaatatcacttcttcatcacttcttgttccatataaatattctctttcttcatggcttattatttgttatttatttaatgaaatatctCTCTGTAGTCActaatgcatgttttatttaaataacactttaacaGTTGGCTTTATTGCCATTTACAGTAGCTACATGTCTCTCCTCAGTGTAGTCGTGTTTATCTACTGAACTCCAGAATAAAGACCTCAGCAGCAGGTAAATTAAAGACAACACTGACCCCTACTGGCCTGTCTGTGACATTACACATTAAATCCACACTGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU68355 lncRNA downstream 20915 559634 ~ 560919 (-) True G57821
TU68277 lncRNA downstream 32829 354007 ~ 549005 (-) True G57763
TU68213 lncRNA downstream 37874 441299 ~ 543960 (-) False G57733
TU68230 lncRNA downstream 43736 521986 ~ 538098 (-) False G57733
XR_004577965.1 lncRNA downstream 44113 535865 ~ 537721 (-) True LOC117597020
TU68265 lncRNA upstream 9289 591727 ~ 799519 (-) True G57751
TU68366 lncRNA upstream 17184 599622 ~ 600276 (-) True G57828
TU68275 lncRNA upstream 18188 600626 ~ 674488 (-) True G57761
TU68369 lncRNA upstream 35847 618285 ~ 631308 (-) False G57831
TU68370 lncRNA upstream 35847 618285 ~ 742153 (-) True G57831
XM_034303482.1 mRNA downstream 84271 347059 ~ 497563 (-) False LOC117597012
XM_034303484.1 mRNA downstream 85030 347059 ~ 496804 (-) True LOC117597012
XM_034303497.1 mRNA downstream 130141 387311 ~ 451693 (-) False LOC117597013
XM_034303491.1 mRNA downstream 130143 395440 ~ 451691 (-) False LOC117597013
XM_034303496.1 mRNA downstream 133263 395440 ~ 448571 (-) False LOC117597013
XM_034303503.1 mRNA upstream 117611 700049 ~ 704378 (-) True LOC117597018
XM_034303500.1 mRNA upstream 127921 710359 ~ 719607 (-) True LOC117597015
XM_034303499.1 mRNA upstream 127927 710365 ~ 719607 (-) False LOC117597015
XM_034303498.1 mRNA upstream 265635 848073 ~ 857200 (-) True LOC117597014
XM_034303472.1 mRNA upstream 280940 863378 ~ 886395 (-) False dis3l2
TU68328 other downstream 84982 448725 ~ 496852 (-) False LOC117597012
TU68285 other downstream 283378 290510 ~ 298456 (-) False eif2b5
TU67777 other downstream 483717 95428 ~ 98117 (-) False LOC117596995
TU68368 other upstream 29805 612243 ~ 614243 (-) True G57830
TU68378 other upstream 101050 683488 ~ 746031 (-) True G57838
TU68254 other upstream 151117 733555 ~ 734771 (-) True G57740
TU68216 other upstream 256994 839432 ~ 856952 (-) False G57733
TU68413 other upstream 459339 1041777 ~ 1048841 (-) False G57868

Expression Profile