RNA id: TU68368


Basic Information

Item Value
RNA id TU68368
length 388
RNA type TUCP
GC content 0.54
exon number 2
gene id G57830
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 612243 ~ 614243 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTGCAGCAGGTCAGACCGTGCCCTACCATGGTGTCCTGCACATCGACCTGAAAGTGCTGGGGAAAGAGTTCAGCGCTGTACCTACCTTCGTTGTTCCAGACTACAGTCAGCCCTTTCTGCTGCAGACCGATGCCTCAGGAATGGGGCTTGGTGCTGTGCTAGTACAGGTCCAAGATGGGGTGGAATGGGTTATTGCGTATGCGAGCAGAGGCCTGAGCCCACCTGAAATGAGGTATCCGGCACACAAGCTTAAGTTCCTTGCTCTCAAGTGGGCCGTGATGGATAAGTTCCATGACCACCTCTACGGACGCAAGTTCTCTGTTCTGACAGACAATGACCCGCTGAAATATGTAATGATCTCAGCCAAACTCGACGCCACAGGTCAACG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU68356 lncRNA downstream 1880 558894 ~ 610363 (-) True G57822
TU68366 lncRNA downstream 11967 599622 ~ 600276 (-) True G57828
TU68348 lncRNA downstream 13041 553769 ~ 599202 (-) True G57818
TU68349 lncRNA downstream 13041 554618 ~ 599202 (-) False G57818
TU68269 lncRNA downstream 17047 552099 ~ 595196 (-) True G57755
TU68369 lncRNA upstream 4042 618285 ~ 631308 (-) False G57831
TU68370 lncRNA upstream 4042 618285 ~ 742153 (-) True G57831
TU68371 lncRNA upstream 4042 618285 ~ 740842 (-) False G57831
TU68372 lncRNA upstream 5462 619705 ~ 620138 (-) True G57832
TU68359 lncRNA upstream 26434 640677 ~ 692268 (-) True G57823
XM_034303482.1 mRNA downstream 114680 347059 ~ 497563 (-) False LOC117597012
XM_034303484.1 mRNA downstream 115439 347059 ~ 496804 (-) True LOC117597012
XM_034303497.1 mRNA downstream 160550 387311 ~ 451693 (-) False LOC117597013
XM_034303491.1 mRNA downstream 160552 395440 ~ 451691 (-) False LOC117597013
XM_034303496.1 mRNA downstream 163672 395440 ~ 448571 (-) False LOC117597013
XM_034303503.1 mRNA upstream 85806 700049 ~ 704378 (-) True LOC117597018
XM_034303500.1 mRNA upstream 96116 710359 ~ 719607 (-) True LOC117597015
XM_034303499.1 mRNA upstream 96122 710365 ~ 719607 (-) False LOC117597015
XM_034303498.1 mRNA upstream 233830 848073 ~ 857200 (-) True LOC117597014
XM_034303472.1 mRNA upstream 249135 863378 ~ 886395 (-) False dis3l2
TU68328 other downstream 115391 448725 ~ 496852 (-) False LOC117597012
TU68285 other downstream 313787 290510 ~ 298456 (-) False eif2b5
TU67777 other downstream 514126 95428 ~ 98117 (-) False LOC117596995
TU68378 other upstream 69245 683488 ~ 746031 (-) True G57838
TU68254 other upstream 119312 733555 ~ 734771 (-) True G57740
TU68216 other upstream 225189 839432 ~ 856952 (-) False G57733
TU68413 other upstream 427534 1041777 ~ 1048841 (-) False G57868
TU68836 other upstream 1078083 1692326 ~ 1692997 (-) True G58190

Expression Profile