RNA id: TU68377


Basic Information

Item Value
RNA id TU68377
length 371
lncRNA type inter_gene
GC content 0.47
exon number 2
gene id G57837
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 672869 ~ 673723 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTGAGAGGCCCCTGAGGGCTGATCTTTTAAATCATCAGAAATTTACATCTTAAAATAATGCGCAGCAACATCTCAGCAACTCCCTTTAGGGGCGCTGTCTCGTTTGTGACTTGTTTATGCTTCTGTGCCACCCCTTCACACTCGAGTCGCACAAGCTTTAACtcctgaagatgaagaggacaTACTGTACCTATCTGGCAGCCAGAAGCgcaagagaaaacaagaagaggaggaaaagaggaaacaggACAGCGAGCAAAGGAGACAAAACAAACATCTGCTGAACACGAACCTGCCGCTGAACCTGCAGTCAAAAGCAACCAGAACTTCAACTAGCAACAAACCCCCACaatcctaaactacagcgatac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU68376 lncRNA downstream 72 672019 ~ 672797 (-) True G57836
TU68369 lncRNA downstream 41561 618285 ~ 631308 (-) False G57831
TU68372 lncRNA downstream 52731 619705 ~ 620138 (-) True G57832
TU68354 lncRNA downstream 54014 559634 ~ 618855 (-) False G57821
TU68356 lncRNA downstream 62506 558894 ~ 610363 (-) True G57822
TU68379 lncRNA upstream 15369 689092 ~ 748045 (-) True G57839
TU68339 lncRNA upstream 21850 695573 ~ 708236 (-) True G57811
XR_004577967.1 lncRNA upstream 22395 696118 ~ 699232 (-) True LOC117597022
TU68224 lncRNA upstream 35960 709683 ~ 761025 (-) False G57733
TU68381 lncRNA upstream 61198 734921 ~ 738411 (-) True LOC117597026
XM_034303482.1 mRNA downstream 175306 347059 ~ 497563 (-) False LOC117597012
XM_034303484.1 mRNA downstream 176065 347059 ~ 496804 (-) True LOC117597012
XM_034303497.1 mRNA downstream 221176 387311 ~ 451693 (-) False LOC117597013
XM_034303491.1 mRNA downstream 221178 395440 ~ 451691 (-) False LOC117597013
XM_034303496.1 mRNA downstream 224298 395440 ~ 448571 (-) False LOC117597013
XM_034303503.1 mRNA upstream 26326 700049 ~ 704378 (-) True LOC117597018
XM_034303500.1 mRNA upstream 36636 710359 ~ 719607 (-) True LOC117597015
XM_034303499.1 mRNA upstream 36642 710365 ~ 719607 (-) False LOC117597015
XM_034303498.1 mRNA upstream 174350 848073 ~ 857200 (-) True LOC117597014
XM_034303472.1 mRNA upstream 189655 863378 ~ 886395 (-) False dis3l2
TU68368 other downstream 58626 612243 ~ 614243 (-) True G57830
TU68328 other downstream 176017 448725 ~ 496852 (-) False LOC117597012
TU68285 other downstream 374413 290510 ~ 298456 (-) False eif2b5
TU67777 other downstream 574752 95428 ~ 98117 (-) False LOC117596995
TU68378 other upstream 9765 683488 ~ 746031 (-) True G57838
TU68254 other upstream 59832 733555 ~ 734771 (-) True G57740
TU68216 other upstream 165709 839432 ~ 856952 (-) False G57733
TU68413 other upstream 368054 1041777 ~ 1048841 (-) False G57868
TU68836 other upstream 1018603 1692326 ~ 1692997 (-) True G58190

Expression Profile