RNA id: XR_004577973.1


Basic Information

Item Value
RNA id XR_004577973.1
length 1701
lncRNA type inter_gene
GC content 0.38
exon number 3
gene id LOC117597026
representative False

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 734921 ~ 748267 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tacaattttacaCCTTTGCAAGCTTTTGTATCTCAGCAGAGAGGATTTGTAAATGCGTGGATGAAACCTACATGGTTTTCTGGGAGCCCCAGTTAAAGACATCGAGAACTTACAGATGTTGGCCTTAACGTGTCAGCGTGGATAGACGTCTATTCCAGTCCTGTCTACACCACACCAGACTTCTCTCTGCATTGTGTAGATGGCTGACTACCACCAAGTTCTCTTCAGGTGTATAGAAACATAACAAAGGGACCAACTGAATACTGCAAGAGCAAAGAACTTGCCTtacttcagaaataaatgttaactgcaaaggaaaataatttatctactatatttctctgtgctctgttttcaagggtaacatttatttatgaagtGTTTACTGTGTAAGGTATAGTTTAAAAATCCTGTGATCTACTGACACTAATGTTGTTCCACACCTGTATGTGTTTCTTTTGTGGAACACCATTCCTCACCTTTCATGTATTTTATAGAAGAAAGAGGCAGTGATAGTGAATGGTGACTGAGGCTCTTAACGTTCTGCCTTACATCTCCTTATAAAAGTCAGACAGGTTTGGAACAAAATAAGAGTGTGTATATTATGACAAGTTTCATTTTGGGGTAAACTATCTCTTTTAATTTGTATCTTTGAGACTAGTGATATTAgcgtataatttatttttattaatctatttGTGAATGCATGGGTGTGaagttatttttctatatttggcTATTTAGTCTTAAGATTTACATACTGTAGAAAGTTTATTCTAAAGATGTATTTGTAAAACAGTGAGTAACggaatgtgatgtgtgtttaaaaaattattatatatatatgtatatatatatatataaatatatatcagctgatttatctatttatttatttgagtgtTTGCGAGTTTAAAAACAAGTAGAAAATGCGTTGATTGTGTAAAGTCGTTTCAGCGTACATTAAGCAAACCAATGACATCGCTTCTGCGTTTGTTTTCAGTGGCGTGTACGACGTTGGTTCAACACGACTTCGATAAGCAAAAAGATGTTGGATCAACATCACAGATCAACGCTGTTTCCATGCCGAGAGAGACATCGATTCTGTGTTGCTTCTGTGTCAGTTTGCTATCTGGGTTTATACATATTTTCTGATATAGTTACCgtaataaagtaaacaaaatagttGCAGTGTTGTTATGTAGCAATATCCATGCACGCAGAGGCGTATCTACAGAGCAGGCAAGGCCAGCAATTACCTGCTGCCCCGCATTCTGAGAGGCCCCTGAGGGCTGATCTTTTAAATCATCAGAAATTTTCATCTTAAAATAATGCGCAGCAACATCTCAGCAACCCCCTTTAGGGGCGCTGTCTCGTTTGTGACTTTATGCTTCTGCGCCACCCCTTCACACTCGAGTCGCACAAGCTTTAACtcctgaagatgaagaggacaTACTGTACCTATCTGGCAGCCAGAAGCgcaagagaaaacaagaagaggaggaaaagaggaaacaggACAGCGAGCAAAGGAGACAAAACAAACATCTGCCGAACACGAACCTGCTGCTGAACCTGCAGTCAAAAGCAACCAGAACTTCAACCAGCAACAAAACCCCCACaatcctaaactacagcgatatACGACgacgcaaaatagaaaataattcggCAACAAACCACCACaatcctaaactacag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU68263 lncRNA downstream 6328 668495 ~ 731841 (-) True G57749
TU68257 lncRNA downstream 7988 647016 ~ 730181 (-) True G57743
TU68242 lncRNA downstream 8078 646698 ~ 730091 (-) False G57735
TU68253 lncRNA downstream 8434 665434 ~ 729735 (-) True G57739
TU68203 lncRNA downstream 26362 441299 ~ 711807 (-) False G57733
TU68384 lncRNA upstream 10877 751586 ~ 752375 (-) True G57843
TU68385 lncRNA upstream 26496 767205 ~ 767558 (-) True G57844
TU68389 lncRNA upstream 81541 822250 ~ 825864 (-) True G57848
TU68391 lncRNA upstream 82071 822780 ~ 824304 (-) True G57849
TU68393 lncRNA upstream 86612 827321 ~ 841661 (-) True G57850
XM_034303500.1 mRNA downstream 18562 710359 ~ 719607 (-) True LOC117597015
XM_034303499.1 mRNA downstream 18562 710365 ~ 719607 (-) False LOC117597015
XM_034303503.1 mRNA downstream 33791 700049 ~ 704378 (-) True LOC117597018
XM_034303492.1 mRNA downstream 332405 395440 ~ 405764 (-) False LOC117597013
XM_034303498.1 mRNA upstream 107364 848073 ~ 857200 (-) True LOC117597014
XM_034303472.1 mRNA upstream 122669 863378 ~ 886395 (-) False dis3l2
XM_034303471.1 mRNA upstream 122669 863378 ~ 886350 (-) False dis3l2
XM_034303473.1 mRNA upstream 122669 863378 ~ 886251 (-) True dis3l2
XM_034303352.1 mRNA upstream 184325 925034 ~ 933915 (-) True LOC113524111
TU68254 other downstream 3398 733555 ~ 734771 (-) True G57740
TU68368 other downstream 123926 612243 ~ 614243 (-) True G57830
TU68328 other downstream 241317 448725 ~ 496852 (-) False LOC117597012
TU68285 other downstream 439713 290510 ~ 298456 (-) False eif2b5
TU67777 other downstream 640052 95428 ~ 98117 (-) False LOC117596995
TU68216 other upstream 98723 839432 ~ 856952 (-) False G57733
TU68413 other upstream 301068 1041777 ~ 1048841 (-) False G57868
TU68836 other upstream 951617 1692326 ~ 1692997 (-) True G58190
trnav-cac_1 other upstream 1259269 1999978 ~ 2000050 (-) True trnav-cac_1
TU69291 other upstream 1330315 2071024 ~ 2083929 (-) False G58534

Expression Profile