RNA id: trnag-ucc_9


Basic Information

Item Value
RNA id trnag-ucc_9
length 72
RNA type tRNA
GC content 0.58
exon number 1
gene id trnag-ucc_9
representative False

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 2680581 ~ 2726284 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GCGTTGGTGGTATAGTGGTGAGCATAGCTGCCTTCCAAGCAGTtgacccgggttcgattcccggccaacGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU69449 lncRNA downstream 50184 2672771 ~ 2676029 (-) True trnag-ucc_4
TU69432 lncRNA downstream 107420 2607752 ~ 2618793 (-) True G58648
TU69434 lncRNA downstream 108784 2611416 ~ 2617429 (-) True G58650
TU69428 lncRNA downstream 115961 2604477 ~ 2610252 (-) True G58645
TU69409 lncRNA downstream 158409 2535115 ~ 2567804 (-) True G58628
TU69498 lncRNA upstream 104888 2831172 ~ 2831373 (-) True G58703
TU69499 lncRNA upstream 106394 2832678 ~ 2834631 (-) True G58704
XR_003402482.2 lncRNA upstream 118296 2844580 ~ 2853974 (-) True LOC113524008
TU69605 lncRNA upstream 303419 3029703 ~ 3084722 (-) False G58809
TU69634 lncRNA upstream 346889 3073173 ~ 3073765 (-) True G58832
XM_026910111.2 mRNA downstream 377869 2284687 ~ 2348344 (-) False greb1l
XM_026910112.2 mRNA downstream 405144 2284687 ~ 2321069 (-) False greb1l
XM_026910110.2 mRNA downstream 405144 2284687 ~ 2321069 (-) True greb1l
XM_026910091.2 mRNA downstream 513612 2204789 ~ 2212601 (-) True LOC113523983
XM_026910084.2 mRNA downstream 533320 2175540 ~ 2192893 (-) True kiaa0232
XM_034303541.1 mRNA upstream 4502 2730786 ~ 2732506 (-) True LOC117597042
XM_034303550.1 mRNA upstream 39234 2765518 ~ 2767521 (-) True LOC117597045
XM_026910119.2 mRNA upstream 78211 2804495 ~ 2811641 (-) False ccdc96
XM_034304004.1 mRNA upstream 78211 2804495 ~ 2811402 (-) True ccdc96
XM_026910120.2 mRNA upstream 78211 2804495 ~ 2811275 (-) False ccdc96
trnag-ucc_8 other downstream 10112 2716030 ~ 2716101 (-) True trnag-ucc_8
trnag-ucc_7 other downstream 16015 2710127 ~ 2710198 (-) True trnag-ucc_7
trnag-ucc_6 other downstream 20091 2706051 ~ 2706122 (-) True trnag-ucc_6
trnag-ucc_5 other downstream 45367 2680775 ~ 2680846 (-) True trnag-ucc_5
trnag-ucc_4 other downstream 50172 2675970 ~ 2676041 (-) False trnag-ucc_4
trnag-ucc_10 other upstream 15473 2741757 ~ 2741828 (-) True trnag-ucc_10
trnag-ucc_11 other upstream 24914 2751198 ~ 2751269 (-) True trnag-ucc_11
trnag-ucc_12 other upstream 55993 2782277 ~ 2782348 (-) True trnag-ucc_12
trnar-ucu other upstream 61418 2787702 ~ 2787773 (-) True trnar-ucu
trnag-ucc_13 other upstream 65589 2791873 ~ 2791944 (-) True trnag-ucc_13