RNA id: TU70115


Basic Information

Item Value
RNA id TU70115
length 500
RNA type TUCP
GC content 0.49
exon number 5
gene id LOC113537670
representative False

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 4198213 ~ 4256284 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

cattagagagacaggatggagctcagtccactccctgtgatgctctTAGTGTGATCTGACGGAgaaaacacaggaagtgtggagactttaacacacaccaaacctcactccgtcagtcagtcattagagagacaggatggagctcagtccactccctgtgatgctctTGTTGGTTTCGCTTACACCAGTGGCCCATGCTCAAGCAAAACCCAAACCGACTGTGAGAGTGAATCCTCAGAGCTCCGTCTACACTGGAGACACCATCACTCTGAGCTGTGAGCTGCAGCCGTCGACTGGATGGGAGTTTCTCTGGTACAAAAATTCACAGCTCGTGAACACTGTAGCTAAAGAAACCAACACACTCAGCATGACAGTCGTTGACGCAGGAgaaacagtgtatcagtgtaaaGCACACTGGCATAACGTGGGTGCAGGCACATACTACTACACAGAGTTCAGCGATCAAGTCAGGATTACAACAAGAGcaATACCTAAACCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU70105 lncRNA downstream 72 4198213 ~ 4238325 (-) False LOC113537670
XR_003403771.2 lncRNA downstream 14942 4221877 ~ 4223455 (-) True LOC113537515
TU70102 lncRNA downstream 38388 4178698 ~ 4200009 (-) False LOC113547240
TU70104 lncRNA downstream 40258 4197328 ~ 4198139 (-) True G59249
TU70101 lncRNA downstream 64908 4172999 ~ 4173489 (-) False LOC113547240
TU70120 lncRNA upstream 73807 4330091 ~ 4374638 (-) True G59264
XR_004578035.1 lncRNA upstream 80964 4337248 ~ 4338266 (-) True LOC117597101
TU70129 lncRNA upstream 106800 4363084 ~ 4411032 (-) True LOC117597095
XR_004578028.1 lncRNA upstream 153236 4409520 ~ 4410821 (-) False LOC117597095
TU70151 lncRNA upstream 230233 4486517 ~ 4487970 (-) True G59287
XM_034303797.1 mRNA downstream 28291 4171199 ~ 4210106 (-) True LOC113547240
XM_034303809.1 mRNA downstream 330318 3894592 ~ 3908079 (-) True LOC117597092
XM_034303814.1 mRNA downstream 527850 3704774 ~ 3710547 (-) True LOC113525490
XM_034303798.1 mRNA downstream 599189 3632029 ~ 3639208 (-) False si:ch73-174h16.4
XM_034303794.1 mRNA downstream 655385 3538315 ~ 3583012 (-) True esyt2b
XM_034303587.1 mRNA upstream 12884 4269168 ~ 4284392 (-) True LOC117597053
XM_026947467.2 mRNA upstream 258319 4514603 ~ 4527107 (-) True maf1b
XM_034303593.1 mRNA upstream 304504 4560788 ~ 4571827 (-) True LOC117597059
XM_034304010.1 mRNA upstream 348888 4605172 ~ 4609562 (-) False LOC113547216
XM_034304009.1 mRNA upstream 348888 4605172 ~ 4609562 (-) True LOC113547216
TU70112 other downstream 3158 4232650 ~ 4235239 (-) False LOC113537670
TU70066 other downstream 318266 3895201 ~ 3920131 (-) False LOC117597092
XR_004578034.1 other downstream 513832 3710571 ~ 3724565 (-) True LOC117597100
XR_004578021.1 other downstream 599189 3629988 ~ 3639208 (-) True si:ch73-174h16.4
TU69907 other downstream 605164 3630059 ~ 3633233 (-) False si:ch73-174h16.4
TU70276 other upstream 390172 4646456 ~ 4647880 (-) False LOC113547272
trnar-ucg_1 other upstream 553508 4809792 ~ 4809864 (-) True trnar-ucg_1
TU70820 other upstream 1222258 5478542 ~ 5485797 (-) False cldn1
TU71182 other upstream 1643965 5900249 ~ 5930199 (-) True G60166
TU71184 other upstream 1643965 5900249 ~ 5959545 (-) False G60166

Expression Profile