RNA id: TU70198



Basic Information


Item Value
RNA id TU70198
length 1741
lncRNA type inter_gene
GC content 0.43
exon number 2
gene id G59329
representative True

Chromosome Information


Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 4677167 ~ 4698795 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence


CcaaaacatatttaatcatttttacataCACTCTGATACATAGATATTTTTCTCTGTGCTCAGAACATggtgttaattattattattattattatttgagatCTTTCAGGGCACGCTGGCTGTTACCGTCTCAACAGCGGTGGATTTCAAAGCAGTCTGATGTCCCGTGCCCTTAACGGCGTATTGCGGATTTCACCTTGAGTTGAGATTGTAGACGGGGCAGAgtcgactttttttttttttttttttttttataagtcatctCCAGAAACGTCTCACTTTGCTTGAACACCCTGCAGCCGTTCTGTTACACTGTCAGGTGAAGAAATGTTGGTGAGATGAACCTTTGGAAGCCTGAAGGATCCAGAAGCAGAACGTTACCCAGAAGGCACTGCGAGCTGATGcgattttccttttaaaaccaGCAAAAGTGGTGGATGAAGCTGTTTAGGAATGTAAGAGCAAAATCATGTAATACTTAAACATATACGTGAGCTTTGCTAAGCTCAAACTGGGTTTTACTTAGCTAGTTACTGAACTTATCTATATCACAACTTAAAAATAGTCTCTGCTAGCTATTTAGCAAACTAATTAATTAACCCACTGGCTAGCTAGCATGGTAGGATCAAGAGGAGAAGTAAAATGCTACCtatttagaagaaaaaacaaacatctgaCTAGCTATGTTCGACGAGCCAATTAGGGGACTACTTTAAGTGGCTGGAAGATAATTAGCACACCAGGTATTAAGCATACTAggtggttagctagctagctagttcttCTTTGTagttagaggggaaaaaaaattacatcaacTATACTGTACACTGTGCAAGTGGCTACATAGCTAATAGCACACCTCTGAGCGGATCTTGCATCTTCATGATCTAAACAGTCGTGTTTTAAGACTGCAAAGTCAGAACGCGATTAGCAATTTAAAAGTTTCCTCTCAGAATTttgaatggggggaaaaaagacagatgGAGTTTCCTTGTAGCTACTACGTCACTCTTGATAGCCTGTTATTAGCGAAGCTAAAAATCACGACGTactgctgctaatgctaaaCTACTAATATGTTCTTATGCGCAGGGTTTATAAGCACAGCTACAGAGCTCGGCTGTCTAATCAGAGCAAAGCTAAATCCTTGTGTTAGCATGAATAACCTCTGTCTTTGTTGGCGAAGCTACATCTTCCTCACAGTCACGTCAGAGAGCGCAGCTAGCATCTCGTTAGCGTTCCTACGTCTCTTCTTAAACGTCCAGCACCAGCACTACAAAAATAACCTAGCAAAAATCTTTGGTGAGTTATGCATCGCATGTTAATTTTTATAAGATGTGCAGTGCTTTGAATGATGGCGTCTCGAGCAGTGCAGTCACTTCCTTTGACGCAGTTTTGACTCATCCGTGTTcaggattaaaataaaaactcagtGTCCCCGTTGTCCTTCATCAGATTTCCAGCATCGGTGTCCAAGCATGTCAAGCATTTTGTTCTTTCGCCTCACGTTTAGGAATAAAGAGCCCACCCCCCCATTTGGTCACCAAGGCAACGGCGTCCCGCTGGCTCTCAGCTGAGCTCGAAGCCCGAGGACGACTCGATGGCGTAGAGCAGCTTGTTCCTCATCAGCTCCTGGTCGCAGAACTCGGGCAGCTTGAGGAGGTTCATGCAGGTGCTGGCGGTGGGCAGGCGCTCCAGATCGTTCCCCCCGTTATGGATGCAGAAGGCAGGGTAGAGC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU70216 lncRNA upstream 5707 4670980 ~ 4671460 (+) True G59343
TU70215 lncRNA upstream 7084 4669863 ~ 4670083 (+) True G59342
TU70213 lncRNA upstream 10712 4666012 ~ 4666455 (+) True G59340
TU70208 lncRNA upstream 12701 4663611 ~ 4664466 (+) True G59338
TU70170 lncRNA upstream 121568 4555395 ~ 4555599 (+) True G59304
TU70374 lncRNA downstream 270061 4950300 ~ 4950651 (+) True G59478
TU70375 lncRNA downstream 272132 4952371 ~ 4952598 (+) True G59479
TU70379 lncRNA downstream 277823 4958062 ~ 4958314 (+) True G59483
TU70396 lncRNA downstream 313250 4993489 ~ 5014813 (+) False G59492
TU70430 lncRNA downstream 331681 5011920 ~ 5017802 (+) True G59521
XM_026947464.2 mRNA upstream 124129 4532921 ~ 4553038 (+) False shrprbck1r
XM_026947463.2 mRNA upstream 124129 4532922 ~ 4553038 (+) False shrprbck1r
XM_034303800.1 mRNA upstream 163704 4475196 ~ 4513463 (+) True LOC117597089
XM_026947552.2 mRNA downstream 59331 4739570 ~ 4746302 (+) True mnx1
XM_034303594.1 mRNA downstream 93947 4774186 ~ 4789253 (+) True LOC113547242
XM_034303595.1 mRNA downstream 125415 4805654 ~ 4866411 (+) True LOC113547214
XM_026947547.2 mRNA downstream 199561 4879800 ~ 4894423 (+) True si:ch211-188c16.1
XM_026947564.2 mRNA downstream 216729 4896968 ~ 4913622 (+) True LOC113547295
XR_004578071.1 other upstream 24046 4650477 ~ 4653121 (+) True LOC117597167
XR_003404798.2 other upstream 124129 4532921 ~ 4553038 (+) True shrprbck1r
XR_004578033.1 other upstream 670826 4005153 ~ 4006341 (+) True LOC117597099
TU69947 other upstream 824600 3850423 ~ 3852567 (+) False LOC113545588
TU69928 other upstream 946819 3728456 ~ 3730348 (+) False LOC113547237
TU70239 other downstream 27203 4707442 ~ 4708398 (+) True G59366
TU70376 other downstream 274896 4955135 ~ 4955462 (+) False LOC113547245
TU70397 other downstream 293956 4974195 ~ 5008133 (+) True G59492
XR_004578077.1 other downstream 499323 5179562 ~ 5188046 (+) False LOC113547261
TU70896 other downstream 899905 5580144 ~ 5596126 (+) False LOC113547291

Expression Profile