RNA id: TU70213


Basic Information

Item Value
RNA id TU70213
length 444
lncRNA type inter_gene
GC content 0.46
exon number 1
gene id G59340
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 4666012 ~ 4666455 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CCACATTGAGATAAGAGTCAGTTCTGACATCAGCCCAGTTACAGGTGGGTAGAGGGCTGCGCAGTGACGGGTAAATCTATAGTACagcaggagagaggagaaatCCCTCAGCATGGGGACTGCTGTCCTGTCATGTGCTGCATTGCTATTGAGAAACAGAGGGATTCTGACCTGTAGGAGGTGGAGATGATCCTCAGTATGTGAGAGCTGCTCCAGCTCTGTGTTTCTCCTCTTCAGCTCAGTGATTTCACACTGCAGATGTTTAATGAACTCTTCAGCCTGCCTCTCTGCTGctttctgcttctcctccaTCACCTTAAGTAGCTCAGCCTGGCTTCTCTCAATGCAGCGCATCAGGGCACTGAAGATCTCCACAACGTCtgctttctccttctctgtgtttttctaacatgagttttttatttaaatagatataaatatttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU70208 lncRNA upstream 1546 4663611 ~ 4664466 (+) True G59338
TU70170 lncRNA upstream 110413 4555395 ~ 4555599 (+) True G59304
TU70012 lncRNA upstream 293455 4372121 ~ 4372557 (+) False LOC117597054
TU70002 lncRNA upstream 369547 4293289 ~ 4296465 (+) False LOC113547236
XR_004578031.1 lncRNA upstream 547422 4117786 ~ 4118590 (+) True LOC117597097
TU70215 lncRNA downstream 3408 4669863 ~ 4670083 (+) True G59342
TU70216 lncRNA downstream 4525 4670980 ~ 4671460 (+) True G59343
TU70198 lncRNA downstream 10712 4677167 ~ 4680239 (+) True G59329
TU70199 lncRNA downstream 10712 4677167 ~ 4698795 (+) False G59329
TU70374 lncRNA downstream 283845 4950300 ~ 4950651 (+) True G59478
XM_026947464.2 mRNA upstream 112974 4532921 ~ 4553038 (+) False shrprbck1r
XM_026947463.2 mRNA upstream 112974 4532922 ~ 4553038 (+) False shrprbck1r
XM_034303800.1 mRNA upstream 152549 4475196 ~ 4513463 (+) True LOC117597089
XM_026947552.2 mRNA downstream 73115 4739570 ~ 4746302 (+) True mnx1
XM_034303594.1 mRNA downstream 107731 4774186 ~ 4789253 (+) True LOC113547242
XM_034303595.1 mRNA downstream 139199 4805654 ~ 4866411 (+) True LOC113547214
XM_026947547.2 mRNA downstream 213345 4879800 ~ 4894423 (+) True si:ch211-188c16.1
XM_026947564.2 mRNA downstream 230513 4896968 ~ 4913622 (+) True LOC113547295
XR_004578071.1 other upstream 12891 4650477 ~ 4653121 (+) True LOC117597167
XR_003404798.2 other upstream 112974 4532921 ~ 4553038 (+) True shrprbck1r
XR_004578033.1 other upstream 659671 4005153 ~ 4006341 (+) True LOC117597099
TU69947 other upstream 813445 3850423 ~ 3852567 (+) False LOC113545588
TU69928 other upstream 935664 3728456 ~ 3730348 (+) False LOC113547237
TU70239 other downstream 40987 4707442 ~ 4708398 (+) True G59366
TU70376 other downstream 288680 4955135 ~ 4955462 (+) False LOC113547245
TU70397 other downstream 307740 4974195 ~ 5008133 (+) True G59492
XR_004578077.1 other downstream 513107 5179562 ~ 5188046 (+) False LOC113547261
TU70896 other downstream 913689 5580144 ~ 5596126 (+) False LOC113547291

Expression Profile