Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU70215 |
| length | 221 |
| lncRNA type | inter_gene |
| GC content | 0.48 |
| exon number | 1 |
| gene id | G59342 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047598.1 |
| NCBI id | CM018544.1 |
| chromosome length | 33267568 |
| location | 4669863 ~ 4670083 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| id | name | namespace |
|---|---|---|
| GO:0055114 | oxidation-reduction process | biological_process |
| GO:0016810 | hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds | molecular_function |
| GO:0016813 | hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amidines | molecular_function |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU70213 | lncRNA | upstream | 3408 | 4666012 ~ 4666455 (+) | True | G59340 |
| TU70208 | lncRNA | upstream | 5397 | 4663611 ~ 4664466 (+) | True | G59338 |
| TU70170 | lncRNA | upstream | 114264 | 4555395 ~ 4555599 (+) | True | G59304 |
| TU70012 | lncRNA | upstream | 297306 | 4372121 ~ 4372557 (+) | False | LOC117597054 |
| TU70002 | lncRNA | upstream | 373398 | 4293289 ~ 4296465 (+) | False | LOC113547236 |
| TU70216 | lncRNA | downstream | 897 | 4670980 ~ 4671460 (+) | True | G59343 |
| TU70198 | lncRNA | downstream | 7084 | 4677167 ~ 4680239 (+) | True | G59329 |
| TU70199 | lncRNA | downstream | 7084 | 4677167 ~ 4698795 (+) | False | G59329 |
| TU70374 | lncRNA | downstream | 280217 | 4950300 ~ 4950651 (+) | True | G59478 |
| TU70375 | lncRNA | downstream | 282288 | 4952371 ~ 4952598 (+) | True | G59479 |
| XM_026947464.2 | mRNA | upstream | 116825 | 4532921 ~ 4553038 (+) | False | shrprbck1r |
| XM_026947463.2 | mRNA | upstream | 116825 | 4532922 ~ 4553038 (+) | False | shrprbck1r |
| XM_034303800.1 | mRNA | upstream | 156400 | 4475196 ~ 4513463 (+) | True | LOC117597089 |
| XM_026947552.2 | mRNA | downstream | 69487 | 4739570 ~ 4746302 (+) | True | mnx1 |
| XM_034303594.1 | mRNA | downstream | 104103 | 4774186 ~ 4789253 (+) | True | LOC113547242 |
| XM_034303595.1 | mRNA | downstream | 135571 | 4805654 ~ 4866411 (+) | True | LOC113547214 |
| XM_026947547.2 | mRNA | downstream | 209717 | 4879800 ~ 4894423 (+) | True | si:ch211-188c16.1 |
| XM_026947564.2 | mRNA | downstream | 226885 | 4896968 ~ 4913622 (+) | True | LOC113547295 |
| XR_004578071.1 | other | upstream | 16742 | 4650477 ~ 4653121 (+) | True | LOC117597167 |
| XR_003404798.2 | other | upstream | 116825 | 4532921 ~ 4553038 (+) | True | shrprbck1r |
| XR_004578033.1 | other | upstream | 663522 | 4005153 ~ 4006341 (+) | True | LOC117597099 |
| TU69947 | other | upstream | 817296 | 3850423 ~ 3852567 (+) | False | LOC113545588 |
| TU69928 | other | upstream | 939515 | 3728456 ~ 3730348 (+) | False | LOC113547237 |
| TU70239 | other | downstream | 37359 | 4707442 ~ 4708398 (+) | True | G59366 |
| TU70376 | other | downstream | 285052 | 4955135 ~ 4955462 (+) | False | LOC113547245 |
| TU70397 | other | downstream | 304112 | 4974195 ~ 5008133 (+) | True | G59492 |
| XR_004578077.1 | other | downstream | 509479 | 5179562 ~ 5188046 (+) | False | LOC113547261 |
| TU70896 | other | downstream | 910061 | 5580144 ~ 5596126 (+) | False | LOC113547291 |
