RNA id: XM_034303593.1


Basic Information

Item Value
RNA id XM_034303593.1
length 1552
RNA type mRNA
GC content 0.46
exon number 11
gene id LOC117597059
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 4560788 ~ 4571827 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ggcgctcagtccactccctgtgatgctctTGCTGATTTCATTTGTACCCCTGCCACATGCTCAAGGGAGTCCTAAAGCTGTCGTGTCCATAAAACCTGataaaaatgtgtacattgGAGAGAGAGTTACTCTCAGATGTGATGTACAGGAAGGAGGAGACACTGAGTGGACATACAGCTGGTATAAGAATAATGACAGAGTCTATACAGAAAACACAGTGCAGGAGGTCAGTATCAGGTCTGTTAGTGACTCTGACCATGGTAACTACACCTGTCGAGGACAGAGACGTGACTCTCAGAGCTCAGACATCGgtgatgctgttacactgactgtatcagAGAGACCACGGGCAGTACTGAGTGTATCTCCACAGAGCTGGCTGACTGAAGGAGACTCAGTGACTCTAAGCTGTGAGGTTACAAACTCCTCTACAGACTGGACATTCAGCTGGTACACAGTTGTTCTCTACAGAGACAATAATGGTCATATCAGTGCTAAAAAAAAGCTTctctcagacagcagcagaggatcTGGAGGCTCCTACACTCTCAGTCCTGCTGCTCTTAACCACACAGGAGTTTATGcgtgcagaggagagagagaagaacgaCCCTCTTACACAAATTACAGCAATCTACAGCTACTATGGATCACTGGTGAATCTCCTCCAGTCTCTCTGATCATCAATCccagcagaactcaacactttaCTAaagactctctctcactcagctGTGAGGACCAGAGTAACTCTACTGAATGGACAGTGAGACGATACAAACACAGTAGAAGTGTGTTGAATTGTTCACGGTGGGGATCAGTTACAGGATCTACATGTAAAATCAGCTCCCTTTCCACATCACGCACTGGAGTTTACTGGTGTGAGTCTGAATCTGGTGACATCAGTAATCCTGTCAACATCACAGTGCATGATGGTGATGTGATCCTGGAGAGTCCTGTCCATCCTGTGACTGAGGGACATCCTCTGAGTCTACGCTGTTTATATCGCAACACAAATTCCTCAAACCTCCGAGCTGATTTCTATAAAGATGGATCAGTTCTCCAGACACAGACTACAGGAGAGATGATCATCCAAACTGTCTCAAAGTCAGATGAaggtttctaccactgtaaacacccagagagaggagagtcactgaAAAGCTGGCTCTCAGTCAGAGGTTCTAGGTTCAGTATTGGAAAAGTAGGAGTGACAGTGGGACTGAGTTTGGCCTTCTTGTTCAGCgttttattaatctttatgaTCCTGCTTTGGTTctggaaaataaacaaagGAAAGCAGCAGAAAACCAATGAGACATCAGAGCAGAATCAGAGCCGGTCAGGAGCTGAAGACTCTCAGTCAGGACACACACCACTTCAGGCTGTAGGAAGTGCTAATATTTATGCCATTGTGGATCAGGCAGATACGAGTGGAACAGGTGAAGGTGCAGCTGAAAGCAGTGAAGCCACTTACACACAGGtcacaaagaaaaagaaggcaAAGAGGAACAATGAAAtgagaatggagaattcagccACACTGTGGTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU70259 lncRNA downstream 278 4559733 ~ 4560510 (-) True G59385
TU70169 lncRNA downstream 5879 4554700 ~ 4554909 (-) True G59303
TU70151 lncRNA downstream 72818 4486517 ~ 4487970 (-) True G59287
TU70129 lncRNA downstream 149756 4363084 ~ 4411032 (-) True LOC117597095
XR_004578028.1 lncRNA downstream 149967 4409520 ~ 4410821 (-) False LOC117597095
TU70266 lncRNA upstream 9114 4580941 ~ 4596531 (-) False LOC117597175
XR_004578076.1 lncRNA upstream 18517 4590344 ~ 4591768 (-) True LOC113547239
XR_004578075.1 lncRNA upstream 21580 4593407 ~ 4596529 (-) True LOC117597175
TU70281 lncRNA upstream 105338 4677165 ~ 4678736 (-) True G59398
TU70283 lncRNA upstream 105338 4677165 ~ 4678736 (-) False G59398
XM_026947467.2 mRNA downstream 33681 4514603 ~ 4527107 (-) True maf1b
XM_034303587.1 mRNA downstream 276396 4269168 ~ 4284392 (-) True LOC117597053
XM_034303795.1 mRNA downstream 304510 4230485 ~ 4256278 (-) True LOC113537670
XM_034303797.1 mRNA downstream 350682 4171199 ~ 4210106 (-) True LOC113547240
XM_034303809.1 mRNA downstream 652709 3894592 ~ 3908079 (-) True LOC117597092
XM_034304010.1 mRNA upstream 33345 4605172 ~ 4609562 (-) False LOC113547216
XM_034304009.1 mRNA upstream 33345 4605172 ~ 4609562 (-) True LOC113547216
XM_026947466.2 mRNA upstream 41201 4613028 ~ 4633265 (-) True LOC113547217
XM_026947531.2 mRNA upstream 62498 4634325 ~ 4640284 (-) True LOC113547273
XM_026947529.2 mRNA upstream 70193 4642020 ~ 4647759 (-) True LOC113547272
TU70115 other downstream 304504 4238397 ~ 4256284 (-) False LOC113537670
TU70112 other downstream 325549 4232650 ~ 4235239 (-) False LOC113537670
TU70066 other downstream 640657 3895201 ~ 3920131 (-) False LOC117597092
XR_004578034.1 other downstream 836223 3710571 ~ 3724565 (-) True LOC117597100
TU69907 other downstream 927555 3630059 ~ 3633233 (-) False si:ch73-174h16.4
TU70276 other upstream 74629 4646456 ~ 4647880 (-) False LOC113547272
trnar-ucg_1 other upstream 237965 4809792 ~ 4809864 (-) True trnar-ucg_1
TU70820 other upstream 906715 5478542 ~ 5485797 (-) False cldn1
TU71182 other upstream 1328422 5900249 ~ 5930199 (-) True G60166
TU71184 other upstream 1328422 5900249 ~ 5959545 (-) False G60166

Expression Profile