RNA id: TU70276



Basic Information


Item Value
RNA id TU70276
length 644
RNA type TUCP
GC content 0.42
exon number 2
gene id LOC113547272
representative False

Chromosome Information


Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 4642020 ~ 4647880 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence


taataataataataataataataataatagtgcatAACGCATTATATAGAGCATTTAcactagaaataaaattatatataaaaaaatcccaaacttcTCAGGCTCATGATAAACCCCCTCCACTCGGCTGATGGTTGGAGAGACTTCATGCTGCATTTCACAGGAAACGAAACTTAAAAGTTTGACGTGAAACCcgccaaaacttttttttttttcttcccccagCGTGACGCTTCTGCAGTGTTTCTCTGAGGAATCAAAACCACAGCAGATCATTGTACGTGCCTCCTAGATGAGTCATGGCTTCCTCCAGCAGCGTCCTGTACGAAGATCAGCTCCAGTGCTCCATCTGTCTGGATGTGTTCACTGATCCAGTCTCTACTCCATGTGGACACAACTTCTGTAAGATGTGTCTGAAAAAGTgctgggacaccagtccatacTGCCAGTGTCCAATGTGTAAGGAGGATTTCCCCAAAAGACCTGAGCTTCGTGTGAATACGTTCATCTCTGAACTGGCTGCTCAGTTTAAGAAGTCAGTTCAGGTGAAATCCAGCAGCATTGCAGATCCACTTCTCTCCAATATTAAAAAGATTCTGTGTGACTCCTGCACTGAGGAAAAGCTGGAAGCTCTAAAGTCCTGT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU70266 lncRNA downstream 49925 4580941 ~ 4596531 (-) False LOC117597175
XR_004578075.1 lncRNA downstream 49927 4593407 ~ 4596529 (-) True LOC117597175
XR_004578076.1 lncRNA downstream 54688 4590344 ~ 4591768 (-) True LOC113547239
TU70264 lncRNA downstream 82961 4562924 ~ 4563495 (-) False LOC117597059
TU70259 lncRNA downstream 85946 4559733 ~ 4560510 (-) True G59385
TU70281 lncRNA upstream 29285 4677165 ~ 4678736 (-) True G59398
TU70283 lncRNA upstream 29285 4677165 ~ 4678736 (-) False G59398
TU70282 lncRNA upstream 29679 4677559 ~ 4678736 (-) False G59398
TU70306 lncRNA upstream 109551 4757431 ~ 4757765 (-) True G59416
TU70478 lncRNA upstream 222280 4870160 ~ 4914451 (-) True G59559
XM_026947531.2 mRNA downstream 6172 4634325 ~ 4640284 (-) True LOC113547273
XM_026947466.2 mRNA downstream 13191 4613028 ~ 4633265 (-) True LOC113547217
XM_034304010.1 mRNA downstream 36894 4605172 ~ 4609562 (-) False LOC113547216
XM_034304009.1 mRNA downstream 36894 4605172 ~ 4609562 (-) True LOC113547216
XM_034303593.1 mRNA downstream 74629 4560788 ~ 4571827 (-) True LOC117597059
XM_026947528.2 mRNA upstream 2814 4650694 ~ 4660380 (-) False LOC113547271
XM_026947527.2 mRNA upstream 6665 4654545 ~ 4660380 (-) True LOC113547271
XM_026947532.2 mRNA upstream 15260 4663140 ~ 4672185 (-) True LOC113547274
XM_034304061.1 mRNA upstream 30859 4678739 ~ 4729122 (-) False ube3c
XM_034304060.1 mRNA upstream 30859 4678739 ~ 4729122 (-) True ube3c
TU70115 other downstream 390172 4238397 ~ 4256284 (-) False LOC113537670
TU70112 other downstream 411217 4232650 ~ 4235239 (-) False LOC113537670
TU70066 other downstream 726325 3895201 ~ 3920131 (-) False LOC117597092
XR_004578034.1 other downstream 921891 3710571 ~ 3724565 (-) True LOC117597100
XR_004578021.1 other downstream 1007248 3629988 ~ 3639208 (-) True si:ch73-174h16.4
trnar-ucg_1 other upstream 161912 4809792 ~ 4809864 (-) True trnar-ucg_1
TU70820 other upstream 830662 5478542 ~ 5485797 (-) False cldn1
TU71182 other upstream 1252369 5900249 ~ 5930199 (-) True G60166
TU71184 other upstream 1252369 5900249 ~ 5959545 (-) False G60166
trnak-cuu_3 other upstream 1533007 6180887 ~ 6180959 (-) True trnak-cuu_3

Expression Profile