RNA id: TU70281


Basic Information

Item Value
RNA id TU70281
length 1506
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id G59398
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 4677165 ~ 4678736 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ttggctTTGTTTTAGAATTTCATCAAGGAGGAAACATTTAGACCTTTTAGGTTGGGGTTTCTCTTTACATGATGACTAATGAAGAGTTCAAGCACTAAtacttgtgtgtgagtgtgtgtgagtgtgtgtgtgagtgtgtgttcaggggtggacaaatcagcaACCCAGGACTGGCATGTTGCGTgtcgagtgttttattcatagttgcgaGCAGGATTAATAGGTGTAATAAGACTTCTGAGCAAGCCGTTAGCAGCTTCTTTTCTCTCGTCCACCAGCCAGacgaagaaaaaaataataaatatcctattgacttaaaataaaacattttttaactaCATGCATATGTTTAAACCATCCGTTCacctcatttttttaatgctttaggGTTCTACTCATCACCTGCTGCTCTACACGCTAATCAGTCAAGAATGCATTCCAGTCATCGTCAGGAACTATTTTCACCACTTgcataaattaaatgatattttttcttcttacgAATCAGCAACACGAAGAGACGTGGAAATGGTGACGAACCCGAGCAAAATGTAAATCGACGATGAGGAGGATATAAGGacaggatgaggaggatggCTACACAGAATCTTTCCCGAGCCAGGAACTGAAATATTCCCTTCATTATTCAGCAGTAATGCACTTCCATACATAACTCGCTTGTTATTCTTGGaggttaaattaaattagccTCTAGATTTCcaaatgattttatgatttgtccatccctggTGCTGAAGGATCGACTGACGGTGTGAACAGGTTAGCGGTCACGTGACATTTTTATGAACGTTTATACCATTTGCAGAGGtagttagttaattagttagtgAGTGGTTTTTCTATAAACGTGTGcgcttttctctctctacatGGTCAGTTTTGCCTCAGCATGGCCGTGTTCGTTTTGTGCACTGAACAAGCAGCACGTCCTCTTGACTCGTCGAACGTTGGCACTAAACCTGACGTCTGTGCAATAATGTACACACTCACGAAGCCGCCTCAGTACGTGTAGGAATAAGCATTGCGATTGCTGCTTTACGCTCTCCAGCTCCAGCACGTGCCTGTTCATTTCTCTGCTGTTTgcctttggttttttttttttttttttttttcctgaatgaatatgagtgtgtgtcGTTCTCTCTTGCACAGTGTTTCAGAAATTCTTCCTTTGTCTCTTCTGTTTAACTCTATATAGCAGGACGATCTCGCAGCATCCCtgttaatgataaaaaaaaaaaaaaaaaaaaaaagtcgacTCTGCCCCGTCTACAATCTCAACTCAAGGTGAAATCCGCAATACGCCGTTAAGGGCACGGGACATCAGACTGCTTTGAAATCCACCGCTGTTGAGACGGTAACAGCCAGCGTGCCCTGAAAGatctcaaataataataataataataattaacaccATGTTCTGAGCACAGAGAAAAATATCTATGTATCAGAGTGtatgtaaaaatgattaaatatgttttgGGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU70266 lncRNA downstream 80634 4580941 ~ 4596531 (-) False LOC117597175
XR_004578075.1 lncRNA downstream 80636 4593407 ~ 4596529 (-) True LOC117597175
XR_004578076.1 lncRNA downstream 85397 4590344 ~ 4591768 (-) True LOC113547239
TU70264 lncRNA downstream 113670 4562924 ~ 4563495 (-) False LOC117597059
TU70259 lncRNA downstream 116655 4559733 ~ 4560510 (-) True G59385
TU70306 lncRNA upstream 78695 4757431 ~ 4757765 (-) True G59416
TU70478 lncRNA upstream 191424 4870160 ~ 4914451 (-) True G59559
TU70504 lncRNA upstream 249624 4928360 ~ 4940658 (-) False LOC117597188
TU70512 lncRNA upstream 262003 4940739 ~ 4942117 (-) False LOC117597188
TU70520 lncRNA upstream 278981 4957717 ~ 4957921 (-) True G59598
XM_026947532.2 mRNA downstream 4980 4663140 ~ 4672185 (-) True LOC113547274
XM_026947528.2 mRNA downstream 16785 4650694 ~ 4660380 (-) False LOC113547271
XM_026947527.2 mRNA downstream 16785 4654545 ~ 4660380 (-) True LOC113547271
XM_026947529.2 mRNA downstream 29406 4642020 ~ 4647759 (-) True LOC113547272
XM_026947531.2 mRNA downstream 36881 4634325 ~ 4640284 (-) True LOC113547273
XM_034304061.1 mRNA upstream 3 4678739 ~ 4729122 (-) False ube3c
XM_034304060.1 mRNA upstream 3 4678739 ~ 4729122 (-) True ube3c
XM_026947582.2 mRNA upstream 79913 4758649 ~ 4769871 (-) True nom1
XM_026947580.2 mRNA upstream 187745 4866481 ~ 4878229 (-) True c8a
XM_034304066.1 mRNA upstream 257149 4935885 ~ 4945021 (-) True LOC117597188
TU70276 other downstream 29285 4646456 ~ 4647880 (-) False LOC113547272
TU70115 other downstream 420881 4238397 ~ 4256284 (-) False LOC113537670
TU70112 other downstream 441926 4232650 ~ 4235239 (-) False LOC113537670
TU70066 other downstream 757034 3895201 ~ 3920131 (-) False LOC117597092
XR_004578034.1 other downstream 952600 3710571 ~ 3724565 (-) True LOC117597100
trnar-ucg_1 other upstream 131056 4809792 ~ 4809864 (-) True trnar-ucg_1
TU70820 other upstream 799806 5478542 ~ 5485797 (-) False cldn1
TU71182 other upstream 1221513 5900249 ~ 5930199 (-) True G60166
TU71184 other upstream 1221513 5900249 ~ 5959545 (-) False G60166
trnak-cuu_3 other upstream 1502151 6180887 ~ 6180959 (-) True trnak-cuu_3

Expression Profile