RNA id: TU70379


Basic Information

Item Value
RNA id TU70379
length 253
lncRNA type inter_gene
GC content 0.33
exon number 1
gene id G59483
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 4958062 ~ 4958314 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CAGGAGGTAGTACATAAGACTGGGGATGATAACAAGGAGTTGTGTATTTATACAGCTTGGTACTATAAGAATTGTCATGAAGgaagtttttgtgtttgtaattaCTGTGAACTTCTTATAGTGAACTTGCCCAAACTTAATGTAAGGTAAATGGTAAATGAAAGATAATCACTACAAATTAATGGACTCTGATTAAGATTTGGACAGGACAAACAAAAGTAAGCAAAAGACTAGGAAATAAACCCATTTCagt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU70375 lncRNA upstream 5464 4952371 ~ 4952598 (+) True G59479
TU70374 lncRNA upstream 7411 4950300 ~ 4950651 (+) True G59478
TU70199 lncRNA upstream 259267 4677167 ~ 4698795 (+) False G59329
TU70198 lncRNA upstream 277823 4677167 ~ 4680239 (+) True G59329
TU70216 lncRNA upstream 286602 4670980 ~ 4671460 (+) True G59343
TU70396 lncRNA downstream 35175 4993489 ~ 5014813 (+) False G59492
TU70430 lncRNA downstream 53606 5011920 ~ 5017802 (+) True G59521
TU70431 lncRNA downstream 53606 5011920 ~ 5017802 (+) False G59521
XR_003404806.2 lncRNA downstream 305702 5264016 ~ 5266014 (+) True LOC113547270
TU70597 lncRNA downstream 343568 5301882 ~ 5363888 (+) True G59663
XM_034304068.1 mRNA upstream 1595 4947137 ~ 4956467 (+) True LOC113547245
XM_034303596.1 mRNA upstream 23144 4922651 ~ 4934918 (+) True LOC117597060
XM_026947564.2 mRNA upstream 44440 4896968 ~ 4913622 (+) True LOC113547295
XM_026947547.2 mRNA upstream 63639 4879800 ~ 4894423 (+) True si:ch211-188c16.1
XM_034303595.1 mRNA upstream 91651 4805654 ~ 4866411 (+) True LOC113547214
XM_034303597.1 mRNA downstream 86814 5045128 ~ 5050075 (+) True LOC117597061
XM_026947512.2 mRNA downstream 194001 5152315 ~ 5159166 (+) False LOC113547260
XM_026947510.2 mRNA downstream 194003 5152317 ~ 5159166 (+) True LOC113547260
XM_034304014.1 mRNA downstream 194006 5152320 ~ 5178390 (+) False LOC113547260
XM_026947514.2 mRNA downstream 194006 5152320 ~ 5169408 (+) False LOC113547260
TU70376 other upstream 2600 4955135 ~ 4955462 (+) False LOC113547245
TU70239 other upstream 249664 4707442 ~ 4708398 (+) True G59366
XR_004578071.1 other upstream 304941 4650477 ~ 4653121 (+) True LOC117597167
XR_003404798.2 other upstream 405024 4532921 ~ 4553038 (+) True shrprbck1r
XR_004578033.1 other upstream 951721 4005153 ~ 4006341 (+) True LOC117597099
TU70397 other downstream 15881 4974195 ~ 5008133 (+) True G59492
XR_004578077.1 other downstream 221248 5179562 ~ 5188046 (+) False LOC113547261
TU70896 other downstream 621830 5580144 ~ 5596126 (+) False LOC113547291
trnat-ugu_1 other downstream 1180986 6139300 ~ 6139372 (+) True trnat-ugu_1
trnat-ugu_2 other downstream 1185251 6143565 ~ 6143637 (+) False trnat-ugu_2

Expression Profile