RNA id: TU70396


Basic Information

Item Value
RNA id TU70396
length 1387
lncRNA type inter_gene
GC content 0.43
exon number 3
gene id G59492
representative False

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 4974195 ~ 5014813 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTTTTGAGACACAACACTAGTTTAGCAGAggtagatggacagagaaatttgtctatttttattgctgaactacgCTAGTGCAGTGTGCCAGGACagtaaaaagaggaaaataacaTGTGCcctattcatttaaatgtggcttgtctgaatataactcccagtaacatttaaaaaaattagcgCACAAAATTGTCTGCGATATTTCTagtattaatttgtaaaacaaacaaatgaaacaaaagaggaggattgtgagtttctctttGCGAAACAAGTGGCCCGGCGTTTTTGGGAATGCCTGCTCTAAATCATTCATCACTTCGTCCTCCTGAGTCATGGTGTCGTTGCTTGTGGTTCTTCAGGCTGACGTTGTGACTGAATGACTCTCCACATTGTTCACACATGAAAGGTTTCTCTCCAGTGTGGACGCGCATGTGGGAAGTGAGGTTTTCCATTTGGTTGAAAGAACGCTCACACACTTGGCATTTGAAAGGCTGTTCTCCAGAGTGGATGAGCTTATGTCTCCTCAGCTTGTAAATGTCCTTAAAGCTCTtcttacacacatcacacacatgttTTTGTGGACCTCCATGGGACCGGACATGTCTGTTGCGTTTATAAATATTGGAAAACCTTTTTACACACTTTGAACAGCTGTATGGCTGTTTTTCTTTAGGATGAGTCTGCTCATGTTCCAGTTTTATTGACCTGGTTTTGAAGACCTTCAGACAGTATTTACACGGGTGATCATAATCCGAATGGAGCTGAGTGTAGTGCGACTTTAGTCCGACCTTGGTGAGGAATCTTTTCCCACATTCTGGACAGATGATAAATTTGGACTTGTGTTCACATTTATGTTCTTTTAAACCTCGGGATTCAGGATCTGCTATAACAAACTTGCCACAGTCCTGACACAGTCTATAGAATGGTTTGACTCCGTGCTCCTGTTCAGCATGTTTCTGAAAACTGCCGACGTCATCAAACCGAACACGTAGTGTTTCAAAATGATGTGCTTGAATGTCGTCACCTTCACTGCACTGAGCACAGCAGAACACTTTTTTGTGTCGATGGACAGAACAGGAGAGCGAGGCCTCGGTCCCACATTGTGTACACCACACCACAAGTTTACCCTGACCATCCTCCTTTAAAGCTGTGAACAGGTCTTCATCCATGGACACATCAGAGTCTGTGGCCTCTGCATCTGAATGTAGTTCCTGCTCATCTGAACTGTCCTGCCCCTTAGATTTCCTCTTTTTGGTCTTAACTTCCTCTTCCTGCAGACTTGCTTCTTCATCCTCGCTAGATAAGTATGAGCCATCCTCTTCAGTGAACACTTGTTCATGGCTCTGCTCACTGCACTTGTTAGCTGAAGACCCAGTATGAACCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU70379 lncRNA upstream 35175 4958062 ~ 4958314 (+) True G59483
TU70375 lncRNA upstream 40891 4952371 ~ 4952598 (+) True G59479
TU70374 lncRNA upstream 42838 4950300 ~ 4950651 (+) True G59478
TU70199 lncRNA upstream 294694 4677167 ~ 4698795 (+) False G59329
TU70198 lncRNA upstream 313250 4677167 ~ 4680239 (+) True G59329
XR_003404806.2 lncRNA downstream 249203 5264016 ~ 5266014 (+) True LOC113547270
TU70597 lncRNA downstream 287069 5301882 ~ 5363888 (+) True G59663
TU70598 lncRNA downstream 287069 5301882 ~ 5369456 (+) False G59663
TU70634 lncRNA downstream 376098 5390911 ~ 5391425 (+) False LOC113547289
TU70665 lncRNA downstream 414468 5429281 ~ 5429622 (+) True G59725
XM_034304068.1 mRNA upstream 37022 4947137 ~ 4956467 (+) True LOC113547245
XM_034303596.1 mRNA upstream 58571 4922651 ~ 4934918 (+) True LOC117597060
XM_026947564.2 mRNA upstream 79867 4896968 ~ 4913622 (+) True LOC113547295
XM_026947547.2 mRNA upstream 99066 4879800 ~ 4894423 (+) True si:ch211-188c16.1
XM_034303595.1 mRNA upstream 127078 4805654 ~ 4866411 (+) True LOC113547214
XM_034303597.1 mRNA downstream 30315 5045128 ~ 5050075 (+) True LOC117597061
XM_026947512.2 mRNA downstream 137502 5152315 ~ 5159166 (+) False LOC113547260
XM_026947510.2 mRNA downstream 137504 5152317 ~ 5159166 (+) True LOC113547260
XM_034304014.1 mRNA downstream 137507 5152320 ~ 5178390 (+) False LOC113547260
XM_026947514.2 mRNA downstream 137507 5152320 ~ 5169408 (+) False LOC113547260
TU70376 other upstream 38027 4955135 ~ 4955462 (+) False LOC113547245
TU70239 other upstream 285091 4707442 ~ 4708398 (+) True G59366
XR_004578071.1 other upstream 340368 4650477 ~ 4653121 (+) True LOC117597167
XR_003404798.2 other upstream 440451 4532921 ~ 4553038 (+) True shrprbck1r
XR_004578033.1 other upstream 987148 4005153 ~ 4006341 (+) True LOC117597099
XR_004578077.1 other downstream 164749 5179562 ~ 5188046 (+) False LOC113547261
TU70896 other downstream 565331 5580144 ~ 5596126 (+) False LOC113547291
trnat-ugu_1 other downstream 1124487 6139300 ~ 6139372 (+) True trnat-ugu_1
trnat-ugu_2 other downstream 1128752 6143565 ~ 6143637 (+) False trnat-ugu_2
trnar-ucu_1 other downstream 1415673 6430486 ~ 6430577 (+) True trnar-ucu_1

Expression Profile