Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU70504 |
| length | 224 |
| lncRNA type | sense_over |
| GC content | 0.44 |
| exon number | 3 |
| gene id | LOC117597188 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_047598.1 |
| NCBI id | CM018544.1 |
| chromosome length | 33267568 |
| location | 4928360 ~ 4945021 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU70478 | lncRNA | downstream | 13909 | 4870160 ~ 4914451 (-) | True | G59559 |
| TU70306 | lncRNA | downstream | 170595 | 4757431 ~ 4757765 (-) | True | G59416 |
| TU70281 | lncRNA | downstream | 249624 | 4677165 ~ 4678736 (-) | True | G59398 |
| TU70283 | lncRNA | downstream | 249624 | 4677165 ~ 4678736 (-) | False | G59398 |
| TU70282 | lncRNA | downstream | 249624 | 4677559 ~ 4678736 (-) | False | G59398 |
| TU70512 | lncRNA | upstream | 81 | 4940739 ~ 4942117 (-) | False | LOC117597188 |
| TU70520 | lncRNA | upstream | 17059 | 4957717 ~ 4957921 (-) | True | G59598 |
| TU70536 | lncRNA | upstream | 144425 | 5085083 ~ 5086357 (-) | False | LOC113547297 |
| XR_004578090.1 | lncRNA | upstream | 181478 | 5122136 ~ 5129619 (-) | False | LOC117597191 |
| XR_004578091.1 | lncRNA | upstream | 181478 | 5122136 ~ 5129619 (-) | True | LOC117597191 |
| XM_026947580.2 | mRNA | downstream | 50131 | 4866481 ~ 4878229 (-) | True | c8a |
| XM_026947582.2 | mRNA | downstream | 158489 | 4758649 ~ 4769871 (-) | True | nom1 |
| XM_034304061.1 | mRNA | downstream | 199238 | 4678739 ~ 4729122 (-) | False | ube3c |
| XM_034304060.1 | mRNA | downstream | 199238 | 4678739 ~ 4729122 (-) | True | ube3c |
| XM_026947532.2 | mRNA | downstream | 256175 | 4663140 ~ 4672185 (-) | True | LOC113547274 |
| XM_026947573.2 | mRNA | upstream | 20333 | 4960991 ~ 4973092 (-) | True | LOC113547302 |
| XM_034304063.1 | mRNA | upstream | 33604 | 4974262 ~ 4982521 (-) | False | LOC113547301 |
| XM_034304062.1 | mRNA | upstream | 33604 | 4974262 ~ 4982283 (-) | True | LOC113547301 |
| XM_034304064.1 | mRNA | upstream | 33604 | 4974262 ~ 4979376 (-) | False | LOC113547301 |
| XM_026947578.2 | mRNA | upstream | 51931 | 4992589 ~ 5003019 (-) | True | LOC113547304 |
| trnar-ucg_1 | other | downstream | 118496 | 4809792 ~ 4809864 (-) | True | trnar-ucg_1 |
| TU70276 | other | downstream | 280480 | 4646456 ~ 4647880 (-) | False | LOC113547272 |
| TU70115 | other | downstream | 672076 | 4238397 ~ 4256284 (-) | False | LOC113537670 |
| TU70112 | other | downstream | 693121 | 4232650 ~ 4235239 (-) | False | LOC113537670 |
| TU70066 | other | downstream | 1008229 | 3895201 ~ 3920131 (-) | False | LOC117597092 |
| TU70820 | other | upstream | 537884 | 5478542 ~ 5485797 (-) | False | cldn1 |
| TU71182 | other | upstream | 959591 | 5900249 ~ 5930199 (-) | True | G60166 |
| TU71184 | other | upstream | 959591 | 5900249 ~ 5959545 (-) | False | G60166 |
| trnak-cuu_3 | other | upstream | 1240229 | 6180887 ~ 6180959 (-) | True | trnak-cuu_3 |
| trnae-cuc_12 | other | upstream | 1503086 | 6443744 ~ 6443815 (-) | True | trnae-cuc_12 |
