RNA id: TU70597


Basic Information

Item Value
RNA id TU70597
length 311
lncRNA type sense_over
GC content 0.58
exon number 2
gene id G59663
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 5301882 ~ 5369456 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGTGGTTGAATGCTTCAGGGCCACAAGGTGGAGTCTGATCACTtctgggggcagtcgtggcctaatggatagagagtcggacttgcaacccgaaggtgaacctgaaggtcatgggttcgagtctcaggtccggcagggattgtaggtggggggagtgaatgaccagcgctctcttccaccctcaataccacgactgaggtgagacccttgagcaaggcaccgaacccccaactgctccccgggcgccgcagcaaaaaaggctgcccactgctccgggtgtgtgttcacggtgtgtgtgttcactactgtgt

Function

GO: NA

KEGG:

id description
ko04360 Axon guidance

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_003404806.2 lncRNA upstream 35868 5264016 ~ 5266014 (+) True LOC113547270
TU70430 lncRNA upstream 284080 5011920 ~ 5017802 (+) True G59521
TU70431 lncRNA upstream 284080 5011920 ~ 5017802 (+) False G59521
TU70396 lncRNA upstream 287069 4993489 ~ 5014813 (+) False G59492
TU70379 lncRNA upstream 343568 4958062 ~ 4958314 (+) True G59483
TU70634 lncRNA downstream 27023 5390911 ~ 5391425 (+) False LOC113547289
TU70665 lncRNA downstream 65393 5429281 ~ 5429622 (+) True G59725
TU70652 lncRNA downstream 73956 5437844 ~ 5438721 (+) True G59712
TU70688 lncRNA downstream 128313 5492201 ~ 5492461 (+) True G59745
TU70647 lncRNA downstream 191062 5554950 ~ 5555698 (+) True G59707
XM_034304016.1 mRNA upstream 49033 5240683 ~ 5252849 (+) True LOC113547265
XM_034304017.1 mRNA upstream 49033 5240683 ~ 5252849 (+) False LOC113547265
XM_034304018.1 mRNA upstream 92121 5195675 ~ 5209761 (+) True LOC113547266
XM_034303598.1 mRNA upstream 110137 5191076 ~ 5191745 (+) True LOC113547246
XM_034304015.1 mRNA upstream 113836 5179562 ~ 5188046 (+) False LOC113547261
XM_026947553.2 mRNA downstream 24480 5388368 ~ 5391829 (+) True LOC113547289
XM_026947549.2 mRNA downstream 38396 5402284 ~ 5410215 (+) True LOC113547286
XM_026947542.2 mRNA downstream 67348 5431236 ~ 5433720 (+) True LOC113547281
XM_026947568.2 mRNA downstream 85594 5449482 ~ 5466119 (+) True angptl1b
XM_034304112.1 mRNA downstream 142813 5506701 ~ 5554666 (+) True LOC113547279
XR_004578077.1 other upstream 113836 5179562 ~ 5188046 (+) False LOC113547261
TU70397 other upstream 293749 4974195 ~ 5008133 (+) True G59492
TU70376 other upstream 346420 4955135 ~ 4955462 (+) False LOC113547245
TU70239 other upstream 593484 4707442 ~ 4708398 (+) True G59366
XR_004578071.1 other upstream 648761 4650477 ~ 4653121 (+) True LOC117597167
TU70896 other downstream 216256 5580144 ~ 5596126 (+) False LOC113547291
trnat-ugu_1 other downstream 775412 6139300 ~ 6139372 (+) True trnat-ugu_1
trnat-ugu_2 other downstream 779677 6143565 ~ 6143637 (+) False trnat-ugu_2
trnar-ucu_1 other downstream 1066598 6430486 ~ 6430577 (+) True trnar-ucu_1
XR_004578001.1 other downstream 1231238 6595126 ~ 6596561 (+) False LOC117597080

Expression Profile