RNA id: TU70634


Basic Information

Item Value
RNA id TU70634
length 515
lncRNA type sense_over
GC content 0.35
exon number 1
gene id LOC113547289
representative False

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 5388368 ~ 5391829 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AGGAGAATCAAAACCAACATTTAAGCATGTGATGTACATGCGCACTAAGAATAATTTATGCTAattaattatgataattatgattataattatgataataatttcatttaaacgCTGATATATAGTTAATCTGTATATCAGTTATACAGTGGATTCAGCTGGGAAACATCGATAATCATCAATAAGTAAATTCACTAAAGTCACGTTAAAGTGATGCTTCAGTGAAATAATTTTGTTCCTCATGTCCTCACTTCGTTTCCCTGTGTCGGTTCTCCATGTTCTCGGATGGAGGAGCTGAGAAGGAAGGAAGCGAAGCAAAGAGGTACAGTTAAAGAAGTGAAAAGTCTTTACCTTCCTACCTTCTCCTTTAATAACCACTTATGCCTTGTGCCTTGTCTCTTAGGGAAGAAGGGGCGATCCagctgggggcggagctaatttctgggccataaaattattaatagcagcctttaaaaagaaaattgaaaaaaaaattgaaaaaaaattttgaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU70598 lncRNA upstream 21455 5301882 ~ 5369456 (+) False G59663
TU70597 lncRNA upstream 27023 5301882 ~ 5363888 (+) True G59663
XR_003404806.2 lncRNA upstream 124897 5264016 ~ 5266014 (+) True LOC113547270
TU70430 lncRNA upstream 373109 5011920 ~ 5017802 (+) True G59521
TU70431 lncRNA upstream 373109 5011920 ~ 5017802 (+) False G59521
TU70665 lncRNA downstream 37856 5429281 ~ 5429622 (+) True G59725
TU70652 lncRNA downstream 46419 5437844 ~ 5438721 (+) True G59712
TU70688 lncRNA downstream 100776 5492201 ~ 5492461 (+) True G59745
TU70647 lncRNA downstream 163525 5554950 ~ 5555698 (+) True G59707
TU70891 lncRNA downstream 165166 5556591 ~ 5556859 (+) True G59908
XM_034303601.1 mRNA upstream 84370 5286357 ~ 5306541 (+) True LOC113547263
XM_034304016.1 mRNA upstream 138062 5240683 ~ 5252849 (+) True LOC113547265
XM_034304017.1 mRNA upstream 138062 5240683 ~ 5252849 (+) False LOC113547265
XM_034304018.1 mRNA upstream 181150 5195675 ~ 5209761 (+) True LOC113547266
XM_034303598.1 mRNA upstream 199166 5191076 ~ 5191745 (+) True LOC113547246
XM_026947549.2 mRNA downstream 10859 5402284 ~ 5410215 (+) True LOC113547286
XM_026947542.2 mRNA downstream 39811 5431236 ~ 5433720 (+) True LOC113547281
XM_026947568.2 mRNA downstream 58057 5449482 ~ 5466119 (+) True angptl1b
XM_034304112.1 mRNA downstream 115276 5506701 ~ 5554666 (+) True LOC113547279
XM_026947556.2 mRNA downstream 188371 5579796 ~ 5596225 (+) True LOC113547291
XR_004578077.1 other upstream 202865 5179562 ~ 5188046 (+) False LOC113547261
TU70397 other upstream 382778 4974195 ~ 5008133 (+) True G59492
TU70376 other upstream 435449 4955135 ~ 4955462 (+) False LOC113547245
TU70239 other upstream 682513 4707442 ~ 4708398 (+) True G59366
XR_004578071.1 other upstream 737790 4650477 ~ 4653121 (+) True LOC117597167
TU70896 other downstream 188719 5580144 ~ 5596126 (+) False LOC113547291
trnat-ugu_1 other downstream 747875 6139300 ~ 6139372 (+) True trnat-ugu_1
trnat-ugu_2 other downstream 752140 6143565 ~ 6143637 (+) False trnat-ugu_2
trnar-ucu_1 other downstream 1039061 6430486 ~ 6430577 (+) True trnar-ucu_1
XR_004578001.1 other downstream 1203701 6595126 ~ 6596561 (+) False LOC117597080

Expression Profile