RNA id: TU70688


Basic Information

Item Value
RNA id TU70688
length 261
lncRNA type inter_gene
GC content 0.34
exon number 1
gene id G59745
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 5492201 ~ 5492461 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gtacagTGGTTATCTAACATTATGTCTTCCTGAAgccagacaggaagtgatgagCTCTGGACATTTAGGCCTAgtgggaaaatgttttgttgaaaTCACACTGGAATGGAAAAATTACGCTATTAACTGGCTAAACACTTTTTTTacaatgtatttgttttaactACGGAACAATTGAGGgtgattttgttttgaaaaattttattcacttttgGTTTTTGATTTCCTTCCCTGGTTATTTATTGAAGCTGTAGAGTTTTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU70652 lncRNA upstream 53480 5437844 ~ 5438721 (+) True G59712
TU70665 lncRNA upstream 62579 5429281 ~ 5429622 (+) True G59725
TU70634 lncRNA upstream 100776 5390911 ~ 5391425 (+) False LOC113547289
TU70598 lncRNA upstream 122745 5301882 ~ 5369456 (+) False G59663
TU70597 lncRNA upstream 128313 5301882 ~ 5363888 (+) True G59663
TU70647 lncRNA downstream 62489 5554950 ~ 5555698 (+) True G59707
TU70891 lncRNA downstream 64130 5556591 ~ 5556859 (+) True G59908
TU70976 lncRNA downstream 232985 5725446 ~ 5725668 (+) True G59990
TU70979 lncRNA downstream 234141 5726602 ~ 5727441 (+) True G59993
TU71017 lncRNA downstream 350314 5842775 ~ 5843074 (+) True G60029
XM_026947568.2 mRNA upstream 26082 5449482 ~ 5466119 (+) True angptl1b
XM_026947542.2 mRNA upstream 58481 5431236 ~ 5433720 (+) True LOC113547281
XM_026947549.2 mRNA upstream 81986 5402284 ~ 5410215 (+) True LOC113547286
XM_026947553.2 mRNA upstream 100372 5388368 ~ 5391829 (+) True LOC113547289
XM_034303601.1 mRNA upstream 185660 5286357 ~ 5306541 (+) True LOC113547263
XM_034304112.1 mRNA downstream 14240 5506701 ~ 5554666 (+) True LOC113547279
XM_026947556.2 mRNA downstream 87335 5579796 ~ 5596225 (+) True LOC113547291
XM_026947540.2 mRNA downstream 291197 5783658 ~ 5824929 (+) True LOC113547280
XM_026947541.2 mRNA downstream 291197 5783658 ~ 5824929 (+) False LOC113547280
XM_034303668.1 mRNA downstream 337345 5829806 ~ 5901415 (+) True phlpp1
XR_004578077.1 other upstream 304155 5179562 ~ 5188046 (+) False LOC113547261
TU70397 other upstream 484068 4974195 ~ 5008133 (+) True G59492
TU70376 other upstream 536739 4955135 ~ 4955462 (+) False LOC113547245
TU70239 other upstream 783803 4707442 ~ 4708398 (+) True G59366
XR_004578071.1 other upstream 839080 4650477 ~ 4653121 (+) True LOC117597167
TU70896 other downstream 87683 5580144 ~ 5596126 (+) False LOC113547291
trnat-ugu_1 other downstream 646839 6139300 ~ 6139372 (+) True trnat-ugu_1
trnat-ugu_2 other downstream 651104 6143565 ~ 6143637 (+) False trnat-ugu_2
trnar-ucu_1 other downstream 938025 6430486 ~ 6430577 (+) True trnar-ucu_1
XR_004578001.1 other downstream 1102665 6595126 ~ 6596561 (+) False LOC117597080

Expression Profile