RNA id: TU70820


Basic Information

Item Value
RNA id TU70820
length 952
RNA type TUCP
GC content 0.45
exon number 4
gene id cldn1
representative False

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 5478542 ~ 5494039 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGATATGGATGTGTTCGTGTCTCTCCCGCTGCAGTGGAGGTCCAGGCGGCTCGGGGGTTCATGCTGTCGGGGATCCTGCTGTGTGGCATCGCCGTCCTGGTGGCCTCGGTGGGCATGCAGTGCACTAAGTGCCTGGAGGATGACGTGGAGCTCAAAAACAAAGTGGCTATGGCTGGAGGAGCGGTGTTCGTCGTCGCAGGTGTCTGTGCTTTCGTTGCTACTATCTGGTACGGAGATAACATCAGACGGCAGTTCTTCAACCCCTTCACCCCGACTAATGGAAGGTACGAGTTTGGTAAAGCTCTGTATATCGGATGGGGAGCGTGTGCTCTCACTGTGATTGGCGGCAGCTTGCTGTGCTGTACCTGTGGCAATAAGAGTTCAGGAGGCACAGCAGCCCGTTACCCAGCGTCCCGCCCGAACCAGCCCTCACAGCCCGGCTACGTCTAACACTCAGCCACACCTCCACTGCAGAACAGTGGGTACTCTCAGGATAATCCAGATACataacaaaacatcaaacctctCAGATTCCCTTTTCTCTAATGTACtgcaaaatatataatatttctcaCTCACTTCATCTTTTCTTCCTGATTTAATAATGCACTCTCAAGCTGTATGATTTGAGATGAATGTTTTGTCAGAAATCCATGTTATAACTGATTGTTTGttcaaaatgatattttctgtaCAATCAACTTTTCTTTGCAGATACTTAATGGAAAGGAATAGGTTGCGTTAGTTTTACCAACCTGGCAACCTTTAGCCACGAAATCCCTGATTCTGATTCAAAGAAACCAGACCAGTGAACTTTGACTcacttttcacatgaatttgAACTCTTCCTAACTTTTCCAAAAAGGTGATTTGTAAGAAtgtctgtagattttttttaaataatgaaattgtgCTAAAATACCAaggaacttgtttttttgtttttttgttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU70816 lncRNA downstream 65717 5407481 ~ 5412825 (-) True G59843
TU70812 lncRNA downstream 87474 5389640 ~ 5391068 (-) True G59839
TU70811 lncRNA downstream 89244 5388430 ~ 5389298 (-) True G59838
TU70802 lncRNA downstream 100262 5378053 ~ 5378280 (-) True G59833
TU70790 lncRNA downstream 148641 5322501 ~ 5329901 (-) True G59823
TU70847 lncRNA upstream 6229 5492026 ~ 5492374 (-) True G59869
TU70843 lncRNA upstream 69154 5554951 ~ 5555776 (-) True G59865
TU70973 lncRNA upstream 238728 5724525 ~ 5724761 (-) True G59987
TU70978 lncRNA upstream 240181 5725978 ~ 5726434 (-) True G59992
TU71093 lncRNA upstream 299498 5785295 ~ 5851346 (-) True G60092
XM_034303679.1 mRNA downstream 35839 5435223 ~ 5442703 (-) False tada1
XM_034303678.1 mRNA downstream 35839 5435223 ~ 5442703 (-) True tada1
XM_034303676.1 mRNA downstream 51773 5410822 ~ 5426769 (-) False fggy
XM_026947561.2 mRNA downstream 51773 5410830 ~ 5426769 (-) True fggy
XM_026947563.2 mRNA downstream 51773 5414201 ~ 5426769 (-) False fggy
XM_026947456.2 mRNA upstream 110493 5596290 ~ 5602267 (-) True igfbp1b
XM_026947457.2 mRNA upstream 110493 5596290 ~ 5602255 (-) False igfbp1b
XM_026947581.2 mRNA upstream 132066 5617863 ~ 5694235 (-) True adcy1b
XM_034304132.1 mRNA upstream 240793 5726590 ~ 5738222 (-) False LOC113547299
XM_026947569.2 mRNA upstream 240793 5726590 ~ 5738222 (-) True LOC113547299
trnar-ucg_1 other downstream 668678 4809792 ~ 4809864 (-) True trnar-ucg_1
TU70276 other downstream 830662 4646456 ~ 4647880 (-) False LOC113547272
TU70115 other downstream 1222258 4238397 ~ 4256284 (-) False LOC113537670
TU70112 other downstream 1243303 4232650 ~ 4235239 (-) False LOC113537670
TU70066 other downstream 1558411 3895201 ~ 3920131 (-) False LOC117597092
TU71182 other upstream 414452 5900249 ~ 5930199 (-) True G60166
TU71184 other upstream 414452 5900249 ~ 5959545 (-) False G60166
trnak-cuu_3 other upstream 695090 6180887 ~ 6180959 (-) True trnak-cuu_3
trnae-cuc_12 other upstream 957947 6443744 ~ 6443815 (-) True trnae-cuc_12
TU71817 other upstream 1396672 6882469 ~ 6899227 (-) False LOC117597002

Expression Profile