RNA id: XM_034303602.1


Basic Information

Item Value
RNA id XM_034303602.1
length 1027
RNA type mRNA
GC content 0.47
exon number 4
gene id cldn1
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 5478542 ~ 5494039 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATGACGCTCAGGGCCGCGTTGAACCCCAGGCGACAGCAGGAACACCGTAAAATGCAGCAGGAAGTCGGGTTCGGTGAGGGGAGAGAGGAGGCCATTAGTCTGGAATGTGACCTGGCTCAGAGAGTGGAGGTCCAGGCGGCTCGGGGGTTCATGCTGTCGGGGATCCTGCTGTGTGGCATCGCCGTCCTGGTGGCCTCGGTGGGCATGCAGTGCACTAAGTGCCTGGAGGATGACGTGGAGCTCAAAAACAAAGTGGCTATGGCTGGAGGAGCGGTGTTCGTCGTCGCAGGTGTCTGTGCTTTCGTTGCTACTATCTGGTACGGAGATAACATCAGACGGCAGTTCTTCAACCCCTTCACCCCGACTAATGGAAGGTACGAGTTTGGTAAAGCTCTGTATATCGGATGGGGAGCGTGTGCTCTCACTGTGATTGGCGGCAGCTTGCTGTGCTGTACCTGTGGCAATAAGAGTTCAGGAGGCACAGCAGCCCGTTACCCAGCGTCCCGCCCGAACCAGCCCTCACAGCCCGGCTACGTCTAACACTCAGCCACACCTCCACTGCAGAACAGTGGGTACTCTCAGGATAATCCAGATACataacaaaacatcaaacctctCAGATTCCCTTTTCTCTAATGTACtgcaaaatatataatatttctcaCTCACTTCATCTTTTCTTCCTGATTTAATAATGCACTCTCAAGCTGTATGATTTGAGATGAATGTTTTGTCAGAAATCCATGTTATAACTGATTGTTTGttcaaaatgatattttctgtaCAATCAACTTTTCTTTGCAGATACTTAATGGAAAGGAATAGGTTGCGTTAGTTTTACCAACCTGGCAACCTTTAGCCACGAAATCCCTGATTCTGATTCAAAGAAACCAGACCAGTGAACTTTGACTcacttttcacatgaatttgAACTCTTCCTAACTTTTCCAAAAAGGTGATTTGTAAGAAtgtctgtagattttttttaaataatgaaattgtgCTAAAATACCAaggaacttgtttt

Function

GO:

id name namespace
GO:0005886 plasma membrane cellular_component
GO:0005923 bicellular tight junction cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005198 structural molecule activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU70816 lncRNA downstream 69538 5407481 ~ 5412825 (-) True G59843
TU70812 lncRNA downstream 91295 5389640 ~ 5391068 (-) True G59839
TU70811 lncRNA downstream 93065 5388430 ~ 5389298 (-) True G59838
TU70802 lncRNA downstream 104083 5378053 ~ 5378280 (-) True G59833
TU70790 lncRNA downstream 152462 5322501 ~ 5329901 (-) True G59823
TU70843 lncRNA upstream 60912 5554951 ~ 5555776 (-) True G59865
TU70973 lncRNA upstream 230486 5724525 ~ 5724761 (-) True G59987
TU70978 lncRNA upstream 231939 5725978 ~ 5726434 (-) True G59992
TU71093 lncRNA upstream 291256 5785295 ~ 5851346 (-) True G60092
TU71143 lncRNA upstream 344095 5838134 ~ 5840474 (-) True G60136
XM_034303679.1 mRNA downstream 39660 5435223 ~ 5442703 (-) False tada1
XM_034303678.1 mRNA downstream 39660 5435223 ~ 5442703 (-) True tada1
XM_034303676.1 mRNA downstream 55594 5410822 ~ 5426769 (-) False fggy
XM_026947456.2 mRNA upstream 102251 5596290 ~ 5602267 (-) True igfbp1b
XM_026947457.2 mRNA upstream 102251 5596290 ~ 5602255 (-) False igfbp1b
XM_026947581.2 mRNA upstream 123824 5617863 ~ 5694235 (-) True adcy1b
XM_034304132.1 mRNA upstream 232551 5726590 ~ 5738222 (-) False LOC113547299
XM_026947569.2 mRNA upstream 232551 5726590 ~ 5738222 (-) True LOC113547299
trnar-ucg_1 other downstream 672499 4809792 ~ 4809864 (-) True trnar-ucg_1
TU70276 other downstream 834483 4646456 ~ 4647880 (-) False LOC113547272
TU70115 other downstream 1226079 4238397 ~ 4256284 (-) False LOC113537670
TU70112 other downstream 1247124 4232650 ~ 4235239 (-) False LOC113537670
TU70066 other downstream 1562232 3895201 ~ 3920131 (-) False LOC117597092
TU71182 other upstream 406210 5900249 ~ 5930199 (-) True G60166
TU71184 other upstream 406210 5900249 ~ 5959545 (-) False G60166
trnak-cuu_3 other upstream 686848 6180887 ~ 6180959 (-) True trnak-cuu_3
trnae-cuc_12 other upstream 949705 6443744 ~ 6443815 (-) True trnae-cuc_12
TU71817 other upstream 1388430 6882469 ~ 6899227 (-) False LOC117597002