RNA id: XM_026947556.2


Basic Information

Item Value
RNA id XM_026947556.2
length 4003
RNA type mRNA
GC content 0.42
exon number 4
gene id LOC113547291
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 5579796 ~ 5596225 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGGCGACACCCGGGACGCTAAGCTTTCACATCTCtgggcattattattattattaatattaatattattagtattattattagaataattattattatttgattttttttcctccgtGAGCATGGTGGTCGCGCTCCGCTCCCTGCTCGTGTCCGTGAGTCTGGCCGCGGTGGCGCGCCTGTCCTCCGCCGTGGGCGCGGTGATCCGCTGCGAGCCGTGCGACGCCGGAGCGCGGACGCTGTGCGACCCCGTGCCCGAGGACTGCGTGGAGCGGGTGCGCGAGCCGGGCTGCGGCTGCTGCGTGACGTGCGCGCTGGCCGAGGGTCGAGCGTGCGGGGTTTACACGGGGCGCTGCGGTGCGGGGCTGGTCTGCCGACACCGGCCGGGCGAGCCGAGGCCGCTGCACGCGCTGCTGGAGGGCCGTGGGGTGTGCGTGAATCAGACCGCACCTCCTCCGGTCAGCGCGCGAGAAGTCGAGAGTGCCAGGATGCCTGAGGAAGATTCCAGCAGCAACACAACGAGTCCGTCAGTGCCAGCTGGACATGAGCAGTCAACGGATGTCTTTCCCTCCCACGGTCGGCGTCCCCCGCCCTACCGGCTTCACCCCAAAGCTGAGGACATCCGACGCGAGCAACTCCGGAAGAGCCAGAGCTTCAAAATAGAGGAACCTCTGGCAGCTGCCCCTTCCAACCATGAGAACATCGCCTTCGATTCCAAGCAGGAGCGAGAGTATGGTCCATGTCGAAGGGAAATGGATGGCATACTTAATATGCTGAAGATCACAGACATGGTGAACCCCCGCGGCTTCCGCATCCCAAACTGTGACAGGAAAGGCTTCTACAGGAAAAAACAGTGCTGGCCGTCTAAAGGCCGAAAACGCGGCATATGCTGGTGCGTGGACAAGTACGGCCAGCCCCTGCCAGGCTTCGATGGAAAGGacagaggaaatgtgcagtgcTACGCCATGGAGAGCCAATAGAAAATACCAGACAggtgaaggaaagagaaagagagatcgAGGGAGTGTGTGTACACTGAAGAATCTCCACGCTCAGACCCTCCATCTCGGACTCGTGTCTCGGTCCTCCAGGAAAAAAATATCGAGGGGGCATAAAATTCTGGGCTTTCCTGAGCTTCGACGAGCTCTAATTTATTTCTGTGCTCCACGCTTTAGCAGCAGTGGAACCCTAGATGCTTGCAGGAGAGAAAGAGGTTGATGGATGAAGGGATGTGGGTATGTCCCAAGAGGCAGTAGAGCTGTAGTGTGTGGACGCAATTGAGACAGGACTGAccccaaaatatatataaaaaaataaataaataaaaaaaaggacacgGAAGAAGGCACTAACGCTATAGAGCACTTCCtataagtttgtgtgtgtatatgtgtgtgtgcgtgtgtgtgtgtgtgtgtggctattGTAATAATTTAACCATGTGCCTCTGTATCGTCATACCATATCAGTGGCTTCAAAGCTTAGTTTCACCTTTAATACACATTCCTGTTGCGTAAAATTGGGAATTAGAATTAAACGAGACTTTATTGATCAGATTCAGTATCAAGAGCATGTGCATGATGCATGAGTACAACCGTATAAACTGACTATATTAGGACTGATCAACCTTCATGACTTCCATATCTGCTTTATTTCCTCTGCATATACAATACTTCTTAACTATCAATCTCAAAATGTTCTATAAACACGTCTGCGATTGCTTTAAAAGACATTCTAAACATAGCAACACTTTTTTTGCTTGAGTGACAGACGGCCATTTTTCTGGCTTTTAAACAAGTGTGTGAAGCTGAAATCTTTCCAGGAGACGTCCTTGTTCCACGCACCCTAACATGAGCcaaaataggatttttttttttttttggactgtgtATACAAAGATTGTCTTCATGTCACTAGATTTTGGTTCACTGCTTTATATTTTCAGGAAGTAATGTTTGCTATGAAATTTCTGACTGGCTTTAAATGTATGCTGGATTTTTGGATAACTTACTGAAACGTTTCCTTTCAACTTTCTCACAACAACCAACTGGTATAAAGGTGTAAAATTTCCAAATAGAGTAGAATTCTATAACCTCTATCTGCTTACAAATTCCCAACTTGGGTATAATTGTAAAATTCCTAACTGGTATAAAAGTCTAAAACTTACAAATTGCAAATTAATTGAAACTGTAAAACTTCCAAATGGTGTAAAAATTGTGAAATCTCCAACTGGAGTAAAATTGGAAAGACTCCAACTAGTGAAAATTTATAACCTTCACAACTGGtgtaaaatactaaaaatcTTACTAGCATGAAATTATCAAATCCTCAACTGGATTTAAAAACTCCAACAGGAATGAAAACTCTAAGACTAGCATAAAATTCCCAAACTagagtaaatttaaaaaatattcaatatagTGTAGaattatggggaaaaaaggccCAACTGGAGTTAAAATGCAAAATCTCCAAATGGAGTAAACTCTAAAACTAgtgtaaaaatttaaaatcctTAACAACAGTAAAATTCAAAAACATTCAATTAGcgtaaaactgtaaaattccCAACTGTAGTGAAAAATTCAAAAACCTCTTGTtgtttcggctgctcccattagggggcgccacagtggatcattggtccacatatttgatttggcacagtttttacgccggatgccaaAACCTCTAACTGATGTGAAACTATAAAATATCCAGTTGAAGTAAAATTCATAAACATTAGCTAgcataaaattgtaaaattccCAACTGGAGAAAATTTCTAAAACCTCCGACTTgtgaaaaattgtaaaataccAAACTGGCTTAAAATTTTGCACCATCCACCTGgtgcaaatttgtaaaaatcCTCAACTGGTATGAACATCAAATGCTAACATAGCTAATAAGGAGGTGAAACACATTTTAGCTTGTACATGTTCACACCTTTTGGTCCAGTTAGGAGCTGATATCTGTATGGTTTGCAGGTACTTTATCCATTATTTCTAGTTCTAGTAACGCTTTTAACCAGCCCTTATTGACCTTCCTCTCGCTAATGGGAATTCCCATTAACATCTTGAAACTGTTCCATTACTTCATCATCTAGCGTCAAGTTTGGTAGATGAACCCTTGAAATGATTCAACCTCCATGAAGACGTCAGGAGCACAACTTAAGCCGAAAGGCATTCTAGTTagatgcttttttcccccccaaatcTGTAAAAGTCAGATAAAGCTGTTTCTCAGGGTTATCTGGAGTCAAAGTATAATCAGGaattattacttaaaaaatatttgatttgcTACATTAAAATCGTGTTTTAAGTCCAAACCCTACTGCATTTATACATAATAGCTGATGATGCTTGATAAATCCATTATGCAAGCTAGGTCACAGATCAGCTACATATAATGCTAGTTACTTAGCTAGCTTATTTTCAAGCCAGTATGAAACTGTAAATAGTTCCAAGGAAATACACCAGACAACTTGGCAAGACAGTTGTTTCAACAGCATGACGAGAGTCTGATAAAATTAGCATCGAATAACGGGGGGGAAAAGACTTTTATCACTGCACACTCTTCACTTTCTTTTGTTAAGGTTTTttggtatattttttttttcttagttctTTTGTGACCAAAAGCAAACTTTGCTGTGAACAGGGAAACTTAGTACACATTAAACACATACTCAGGCTTCTAGTGATATTCAAATGCTtctagtacagtacagtgtagcTAAGAGTAtggcttttttttcattatactGGCTTCTTTTGGACTAAATCTCCATTGTGATAAGCTATTAGcaagaaaataaacaagaaacCAAAACCTCTACCTGGGGACATTACAGCACACCATGTGTAAACAGTATTTTGACATTATTAACTTGTGTGGCTAGATTTTTATAAGTGTCAGGTTATTCCCAGTGCCTTAAAACAGGGAGATATAtctgtgtatatttttactttcaGTAATTAAAGATCTAATTTAAGGAA

Function

GO: NA

KEGG:

id description
K10138 IGFBP3; insulin-like growth factor-binding protein 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU70891 lncRNA upstream 22937 5556591 ~ 5556859 (+) True G59908
TU70647 lncRNA upstream 24098 5554950 ~ 5555698 (+) True G59707
TU70688 lncRNA upstream 87335 5492201 ~ 5492461 (+) True G59745
TU70652 lncRNA upstream 141075 5437844 ~ 5438721 (+) True G59712
TU70665 lncRNA upstream 150174 5429281 ~ 5429622 (+) True G59725
TU70976 lncRNA downstream 129221 5725446 ~ 5725668 (+) True G59990
TU70979 lncRNA downstream 130377 5726602 ~ 5727441 (+) True G59993
TU71017 lncRNA downstream 246550 5842775 ~ 5843074 (+) True G60029
TU71021 lncRNA downstream 257444 5853669 ~ 5853888 (+) True G60033
TU71024 lncRNA downstream 301674 5897899 ~ 5898990 (+) True G60036
XM_034304112.1 mRNA upstream 25130 5506701 ~ 5554666 (+) True LOC113547279
XM_026947568.2 mRNA upstream 113677 5449482 ~ 5466119 (+) True angptl1b
XM_026947542.2 mRNA upstream 146076 5431236 ~ 5433720 (+) True LOC113547281
XM_026947549.2 mRNA upstream 169581 5402284 ~ 5410215 (+) True LOC113547286
XM_026947553.2 mRNA upstream 187967 5388368 ~ 5391829 (+) True LOC113547289
XM_026947540.2 mRNA downstream 187433 5783658 ~ 5824929 (+) True LOC113547280
XM_026947541.2 mRNA downstream 187433 5783658 ~ 5824929 (+) False LOC113547280
XM_034303668.1 mRNA downstream 233581 5829806 ~ 5901415 (+) True phlpp1
XM_034303604.1 mRNA downstream 323418 5919643 ~ 5928583 (+) True LOC117597064
XM_026947473.2 mRNA downstream 395703 5991928 ~ 6009784 (+) True dusp22b
XR_004578077.1 other upstream 391750 5179562 ~ 5188046 (+) False LOC113547261
TU70397 other upstream 571663 4974195 ~ 5008133 (+) True G59492
TU70376 other upstream 624334 4955135 ~ 4955462 (+) False LOC113547245
TU70239 other upstream 871398 4707442 ~ 4708398 (+) True G59366
XR_004578071.1 other upstream 926675 4650477 ~ 4653121 (+) True LOC117597167
trnat-ugu_1 other downstream 543075 6139300 ~ 6139372 (+) True trnat-ugu_1
trnat-ugu_2 other downstream 547340 6143565 ~ 6143637 (+) False trnat-ugu_2
trnar-ucu_1 other downstream 834261 6430486 ~ 6430577 (+) True trnar-ucu_1
XR_004578001.1 other downstream 998901 6595126 ~ 6596561 (+) False LOC117597080
XR_003402765.2 other downstream 2459831 8056056 ~ 8062839 (+) False LOC113526345

Expression Profile