Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU71024 |
| length | 474 |
| lncRNA type | intronic |
| GC content | 0.35 |
| exon number | 2 |
| gene id | G60036 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047598.1 |
| NCBI id | CM018544.1 |
| chromosome length | 33267568 |
| location | 5897899 ~ 5898990 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU71021 | lncRNA | upstream | 44011 | 5853669 ~ 5853888 (+) | True | G60033 |
| TU71017 | lncRNA | upstream | 54825 | 5842775 ~ 5843074 (+) | True | G60029 |
| TU70979 | lncRNA | upstream | 170458 | 5726602 ~ 5727441 (+) | True | G59993 |
| TU70976 | lncRNA | upstream | 172231 | 5725446 ~ 5725668 (+) | True | G59990 |
| TU70891 | lncRNA | upstream | 341040 | 5556591 ~ 5556859 (+) | True | G59908 |
| TU71239 | lncRNA | downstream | 244542 | 6143532 ~ 6143802 (+) | True | trnat-ugu_2 |
| TU71260 | lncRNA | downstream | 309112 | 6208102 ~ 6208314 (+) | True | G60232 |
| XR_004577958.1 | lncRNA | downstream | 378615 | 6277605 ~ 6295446 (+) | True | LOC117596998 |
| TU71302 | lncRNA | downstream | 397001 | 6295991 ~ 6296234 (+) | True | G60267 |
| XR_004577957.1 | lncRNA | downstream | 402335 | 6301325 ~ 6305562 (+) | False | LOC117596997 |
| XM_026947540.2 | mRNA | upstream | 72970 | 5783658 ~ 5824929 (+) | True | LOC113547280 |
| XM_026947541.2 | mRNA | upstream | 72970 | 5783658 ~ 5824929 (+) | False | LOC113547280 |
| XM_026947556.2 | mRNA | upstream | 301674 | 5579796 ~ 5596225 (+) | True | LOC113547291 |
| XM_034304112.1 | mRNA | upstream | 343233 | 5506701 ~ 5554666 (+) | True | LOC113547279 |
| XM_026947568.2 | mRNA | upstream | 431780 | 5449482 ~ 5466119 (+) | True | angptl1b |
| XM_034303604.1 | mRNA | downstream | 20653 | 5919643 ~ 5928583 (+) | True | LOC117597064 |
| XM_026947473.2 | mRNA | downstream | 92938 | 5991928 ~ 6009784 (+) | True | dusp22b |
| XM_026947555.2 | mRNA | downstream | 115930 | 6014920 ~ 6037232 (+) | True | irf4a |
| XM_026947455.2 | mRNA | downstream | 263163 | 6162153 ~ 6163840 (+) | True | foxq1a |
| XM_026947454.2 | mRNA | downstream | 272039 | 6171029 ~ 6177159 (+) | True | foxf2a |
| TU70896 | other | upstream | 301773 | 5580144 ~ 5596126 (+) | False | LOC113547291 |
| XR_004578077.1 | other | upstream | 709853 | 5179562 ~ 5188046 (+) | False | LOC113547261 |
| TU70397 | other | upstream | 889766 | 4974195 ~ 5008133 (+) | True | G59492 |
| TU70376 | other | upstream | 942437 | 4955135 ~ 4955462 (+) | False | LOC113547245 |
| TU70239 | other | upstream | 1189501 | 4707442 ~ 4708398 (+) | True | G59366 |
| trnat-ugu_1 | other | downstream | 240310 | 6139300 ~ 6139372 (+) | True | trnat-ugu_1 |
| trnat-ugu_2 | other | downstream | 244575 | 6143565 ~ 6143637 (+) | False | trnat-ugu_2 |
| trnar-ucu_1 | other | downstream | 531496 | 6430486 ~ 6430577 (+) | True | trnar-ucu_1 |
| XR_004578001.1 | other | downstream | 696136 | 6595126 ~ 6596561 (+) | False | LOC117597080 |
| XR_003402765.2 | other | downstream | 2157066 | 8056056 ~ 8062839 (+) | False | LOC113526345 |
