RNA id: TU71195


Basic Information

Item Value
RNA id TU71195
length 378
lncRNA type read_through
GC content 0.53
exon number 2
gene id G60173
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 5914343 ~ 5938132 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ggcctaatggatagagagtcggacttgcaacccgaaggtgaacctgaaggttgtgggttcgagtctcgggtccggcagggattgtaggtggggggagtgaatgaccagcgctctcttccaccctcaataccacgactgaggtgagacccttgagcaaggcaccgaacccccaactgctccccgggcgccgcagcaaaaaaaaaggctgcccactgctctgggtgtgtgttcacggtgtgtgtgtgttcactactgtgtgtgtgtgtgcacttggatgggttaaatgcagagcacaaattccgagtatgggtcaccatacatgaccacaagtcacttcacttcacttcagtgaTAAAGCAGGTTTCTAAAtaacatatg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU71164 lncRNA downstream 15328 5897379 ~ 5899015 (-) True G60151
TU71166 lncRNA downstream 15328 5898093 ~ 5899015 (-) False G60151
TU71093 lncRNA downstream 62997 5785295 ~ 5851346 (-) True G60092
TU71143 lncRNA downstream 73869 5838134 ~ 5840474 (-) True G60136
TU70978 lncRNA downstream 187909 5725978 ~ 5726434 (-) True G59992
TU71204 lncRNA upstream 31763 5969895 ~ 5972613 (-) True G60181
TU71206 lncRNA upstream 31763 5969895 ~ 5972613 (-) False G60181
TU71348 lncRNA upstream 441566 6379698 ~ 6379897 (-) True G60311
TU71365 lncRNA upstream 451571 6389703 ~ 6390077 (-) True G60328
TU71370 lncRNA upstream 456733 6394865 ~ 6395071 (-) True G60333
XM_034304132.1 mRNA downstream 176121 5726590 ~ 5738222 (-) False LOC113547299
XM_026947569.2 mRNA downstream 176121 5726590 ~ 5738222 (-) True LOC113547299
XM_026947581.2 mRNA downstream 220108 5617863 ~ 5694235 (-) True adcy1b
XM_026947456.2 mRNA downstream 312076 5596290 ~ 5602267 (-) True igfbp1b
XM_026947543.2 mRNA upstream 17995 5956127 ~ 5967304 (-) True LOC113547282
XM_026947470.2 mRNA upstream 34492 5972624 ~ 5986215 (-) True ripk1l
XM_034303940.1 mRNA upstream 580331 6518463 ~ 6560326 (-) False mylk4a
XM_034303939.1 mRNA upstream 580331 6518463 ~ 6560326 (-) False mylk4a
XM_034303938.1 mRNA upstream 580331 6518463 ~ 6531220 (-) False mylk4a
TU70820 other downstream 428546 5478542 ~ 5485797 (-) False cldn1
trnar-ucg_1 other downstream 1104479 4809792 ~ 4809864 (-) True trnar-ucg_1
TU70276 other downstream 1266463 4646456 ~ 4647880 (-) False LOC113547272
TU70115 other downstream 1658059 4238397 ~ 4256284 (-) False LOC113537670
TU70112 other downstream 1679104 4232650 ~ 4235239 (-) False LOC113537670
trnak-cuu_3 other upstream 242755 6180887 ~ 6180959 (-) True trnak-cuu_3
trnae-cuc_12 other upstream 505612 6443744 ~ 6443815 (-) True trnae-cuc_12
TU71817 other upstream 944337 6882469 ~ 6899227 (-) False LOC117597002
XR_004578041.1 other upstream 2637374 8575506 ~ 8578850 (-) False LOC113526753
TU72820 other upstream 3045102 8983234 ~ 8984453 (-) True G61478

Expression Profile