RNA id: TU71239


Basic Information

Item Value
RNA id TU71239
length 271
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id trnat-ugu_2
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 6143532 ~ 6143802 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

aaaagaTGTTACAGTTATATCATAAGCACATAAGGCCCCATAGCTCAGTGGTTAGAGCACTGGTCTTGTAAACCAGGGGTCGTGAGTTCAATCCTCACTGGGGCCTTAATGTAAAGCTTTAGGGAAGTgctggctcagtggttaaggctctggacACAGATACAAGCCGAGAAAAGCCCTTAACCCTATATGCTACATAATATGGGTGACCCTGAcatgggatatgtgaagaaaccAAAATttgctgtactgtatatatatatatgataag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU71024 lncRNA upstream 244542 5897899 ~ 5898990 (+) True G60036
TU71021 lncRNA upstream 289644 5853669 ~ 5853888 (+) True G60033
TU71017 lncRNA upstream 300458 5842775 ~ 5843074 (+) True G60029
TU70979 lncRNA upstream 416091 5726602 ~ 5727441 (+) True G59993
TU70976 lncRNA upstream 417864 5725446 ~ 5725668 (+) True G59990
TU71260 lncRNA downstream 64300 6208102 ~ 6208314 (+) True G60232
XR_004577958.1 lncRNA downstream 133803 6277605 ~ 6295446 (+) True LOC117596998
TU71302 lncRNA downstream 152189 6295991 ~ 6296234 (+) True G60267
XR_004577957.1 lncRNA downstream 157523 6301325 ~ 6305562 (+) False LOC117596997
XR_004577956.1 lncRNA downstream 157523 6301325 ~ 6304890 (+) True LOC117596997
XM_026947555.2 mRNA upstream 106300 6014920 ~ 6037232 (+) True irf4a
XM_026947473.2 mRNA upstream 133748 5991928 ~ 6009784 (+) True dusp22b
XM_034303604.1 mRNA upstream 214949 5919643 ~ 5928583 (+) True LOC117597064
XM_034303668.1 mRNA upstream 242117 5829806 ~ 5901415 (+) True phlpp1
XM_026947540.2 mRNA upstream 318603 5783658 ~ 5824929 (+) True LOC113547280
XM_026947455.2 mRNA downstream 18351 6162153 ~ 6163840 (+) True foxq1a
XM_026947454.2 mRNA downstream 27227 6171029 ~ 6177159 (+) True foxf2a
XM_026947472.2 mRNA downstream 58720 6202522 ~ 6204890 (+) True foxc1a
XM_034303942.1 mRNA downstream 407183 6550985 ~ 6572077 (+) False wrnip1
XM_034303941.1 mRNA downstream 407184 6550986 ~ 6570557 (+) True wrnip1
trnat-ugu_1 other upstream 4160 6139300 ~ 6139372 (+) True trnat-ugu_1
TU70896 other upstream 547406 5580144 ~ 5596126 (+) False LOC113547291
XR_004578077.1 other upstream 955486 5179562 ~ 5188046 (+) False LOC113547261
TU70397 other upstream 1135399 4974195 ~ 5008133 (+) True G59492
TU70376 other upstream 1188070 4955135 ~ 4955462 (+) False LOC113547245
trnar-ucu_1 other downstream 286684 6430486 ~ 6430577 (+) True trnar-ucu_1
XR_004578001.1 other downstream 451324 6595126 ~ 6596561 (+) False LOC117597080
XR_003402765.2 other downstream 1912254 8056056 ~ 8062839 (+) False LOC113526345
XR_004578049.1 other downstream 2551550 8695352 ~ 8724440 (+) True LOC117597156
TU72678 other downstream 2750668 8894470 ~ 8896729 (+) True G61359

Expression Profile