RNA id: TU71260


Basic Information

Item Value
RNA id TU71260
length 213
lncRNA type inter_gene
GC content 0.46
exon number 1
gene id G60232
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 6208102 ~ 6208314 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

cacacacacactcacacactcacacactcacacacacagacacacgacATGCATATTGCGCTTTTCTCCTAGAAGCTGTTGTTTTCTTCTGGATATTTTCTGCTCGTGTAAATCGCTCTTTTAAAGTTGTTGAAAAAAGAGCAATTGCGTTTGTGCGCATGCGCGCTTTCTCACACTCAGCCACCGGGCTCCGGGTCaaggagcaaaaacaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU71239 lncRNA upstream 64300 6143532 ~ 6143802 (+) True trnat-ugu_2
TU71024 lncRNA upstream 309112 5897899 ~ 5898990 (+) True G60036
TU71021 lncRNA upstream 354214 5853669 ~ 5853888 (+) True G60033
TU71017 lncRNA upstream 365028 5842775 ~ 5843074 (+) True G60029
TU70979 lncRNA upstream 480661 5726602 ~ 5727441 (+) True G59993
XR_004577958.1 lncRNA downstream 69291 6277605 ~ 6295446 (+) True LOC117596998
TU71302 lncRNA downstream 87677 6295991 ~ 6296234 (+) True G60267
XR_004577957.1 lncRNA downstream 93011 6301325 ~ 6305562 (+) False LOC117596997
XR_004577956.1 lncRNA downstream 93011 6301325 ~ 6304890 (+) True LOC117596997
TU71349 lncRNA downstream 171931 6380245 ~ 6380462 (+) True G60312
XM_026947472.2 mRNA upstream 3212 6202522 ~ 6204890 (+) True foxc1a
XM_026947454.2 mRNA upstream 30943 6171029 ~ 6177159 (+) True foxf2a
XM_026947455.2 mRNA upstream 44262 6162153 ~ 6163840 (+) True foxq1a
XM_026947555.2 mRNA upstream 170870 6014920 ~ 6037232 (+) True irf4a
XM_026947473.2 mRNA upstream 198318 5991928 ~ 6009784 (+) True dusp22b
XM_034303942.1 mRNA downstream 342671 6550985 ~ 6572077 (+) False wrnip1
XM_034303941.1 mRNA downstream 342672 6550986 ~ 6570557 (+) True wrnip1
XM_026947544.2 mRNA downstream 363754 6572068 ~ 6576902 (+) True LOC113547283
XM_034303652.1 mRNA downstream 372041 6580355 ~ 6602411 (+) True dhx30
XM_026947481.2 mRNA downstream 436214 6644528 ~ 6647156 (+) False LOC113547232
trnat-ugu_2 other upstream 64465 6143565 ~ 6143637 (+) False trnat-ugu_2
trnat-ugu_1 other upstream 68730 6139300 ~ 6139372 (+) True trnat-ugu_1
TU70896 other upstream 611976 5580144 ~ 5596126 (+) False LOC113547291
XR_004578077.1 other upstream 1020056 5179562 ~ 5188046 (+) False LOC113547261
TU70397 other upstream 1199969 4974195 ~ 5008133 (+) True G59492
trnar-ucu_1 other downstream 222172 6430486 ~ 6430577 (+) True trnar-ucu_1
XR_004578001.1 other downstream 386812 6595126 ~ 6596561 (+) False LOC117597080
XR_003402765.2 other downstream 1847742 8056056 ~ 8062839 (+) False LOC113526345
XR_004578049.1 other downstream 2487038 8695352 ~ 8724440 (+) True LOC117597156
TU72678 other downstream 2686156 8894470 ~ 8896729 (+) True G61359

Expression Profile