RNA id: XR_004578001.1


Basic Information

Item Value
RNA id XR_004578001.1
length 170
RNA type ncRNA
GC content 0.45
exon number 3
gene id LOC117597080
representative False

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 6595126 ~ 6596601 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTGTGATGGACAAGTTGGAGACTGATGTtccaggaggagagacagaaaagaatacAGCTGGAACCATTACTGAGGTTACAACAGTGCTGACGACTATAAAGGACAAGATGGAGCCTGAGGTTCCAagaaaggagacagaaaagATTACCATTGTGAAGGAGCAATCTGGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU71422 lncRNA upstream 168782 6426119 ~ 6426344 (+) True G60384
TU71400 lncRNA upstream 181113 6413800 ~ 6414013 (+) True G60362
TU71349 lncRNA upstream 214664 6380245 ~ 6380462 (+) True G60312
XR_004577957.1 lncRNA upstream 289564 6301325 ~ 6305562 (+) False LOC117596997
XR_004578118.1 lncRNA downstream 26275 6622836 ~ 6623651 (+) True LOC113547253
XR_003404802.2 lncRNA downstream 52221 6648782 ~ 6651846 (+) True LOC113547233
TU71586 lncRNA downstream 87775 6684336 ~ 6685832 (+) False LOC113547228
TU71609 lncRNA downstream 192659 6789220 ~ 6797109 (+) True G60529
XR_004577961.1 lncRNA downstream 205895 6802456 ~ 6805176 (+) False LOC113527002
XM_026947544.2 mRNA upstream 18224 6572068 ~ 6576902 (+) True LOC113547283
XM_034303942.1 mRNA upstream 23049 6550985 ~ 6572077 (+) False wrnip1
XM_034303941.1 mRNA upstream 24569 6550986 ~ 6570557 (+) True wrnip1
XM_026947472.2 mRNA upstream 390236 6202522 ~ 6204890 (+) True foxc1a
XM_026947454.2 mRNA upstream 417967 6171029 ~ 6177159 (+) True foxf2a
XM_026947481.2 mRNA downstream 47967 6644528 ~ 6647156 (+) False LOC113547232
XM_034303774.1 mRNA downstream 48086 6644647 ~ 6683316 (+) False LOC113547232
XM_026947478.2 mRNA downstream 83929 6680490 ~ 6683316 (+) True LOC113547232
XM_026947479.2 mRNA downstream 83930 6680491 ~ 6683316 (+) False LOC113547232
XM_026947475.2 mRNA downstream 88062 6684623 ~ 6704346 (+) False LOC113547228
trnar-ucu_1 other upstream 164549 6430486 ~ 6430577 (+) True trnar-ucu_1
trnat-ugu_2 other upstream 451489 6143565 ~ 6143637 (+) False trnat-ugu_2
trnat-ugu_1 other upstream 455754 6139300 ~ 6139372 (+) True trnat-ugu_1
TU70896 other upstream 999000 5580144 ~ 5596126 (+) False LOC113547291
XR_004578077.1 other upstream 1407080 5179562 ~ 5188046 (+) False LOC113547261
XR_003402765.2 other downstream 1459495 8056056 ~ 8062839 (+) False LOC113526345
XR_004578049.1 other downstream 2098791 8695352 ~ 8724440 (+) True LOC117597156
TU72678 other downstream 2297909 8894470 ~ 8896729 (+) True G61359
XR_004578067.1 other downstream 3161899 9758460 ~ 9774049 (+) False rbm14b
XR_003403991.2 other downstream 3210760 9807321 ~ 9832280 (+) False gal3st3

Expression Profile