Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU71586 |
| length | 582 |
| lncRNA type | sense_over |
| GC content | 0.41 |
| exon number | 2 |
| gene id | LOC113547228 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_047598.1 |
| NCBI id | CM018544.1 |
| chromosome length | 33267568 |
| location | 6684336 ~ 6704346 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| XR_003404802.2 | lncRNA | upstream | 32490 | 6648782 ~ 6651846 (+) | True | LOC113547233 |
| XR_004578118.1 | lncRNA | upstream | 60685 | 6622836 ~ 6623651 (+) | True | LOC113547253 |
| TU71549 | lncRNA | upstream | 87735 | 6595126 ~ 6596601 (+) | True | LOC117597080 |
| TU71422 | lncRNA | upstream | 257992 | 6426119 ~ 6426344 (+) | True | G60384 |
| TU71400 | lncRNA | upstream | 270323 | 6413800 ~ 6414013 (+) | True | G60362 |
| TU71609 | lncRNA | downstream | 103388 | 6789220 ~ 6797109 (+) | True | G60529 |
| XR_004577961.1 | lncRNA | downstream | 116624 | 6802456 ~ 6805176 (+) | False | LOC113527002 |
| XR_003402827.2 | lncRNA | downstream | 118035 | 6803867 ~ 6805176 (+) | True | LOC113527002 |
| TU71618 | lncRNA | downstream | 124334 | 6810166 ~ 6812401 (+) | True | G60536 |
| TU71634 | lncRNA | downstream | 191199 | 6877031 ~ 6895222 (+) | True | G60548 |
| XM_034303774.1 | mRNA | upstream | 1020 | 6644647 ~ 6683316 (+) | False | LOC113547232 |
| XM_026947478.2 | mRNA | upstream | 1020 | 6680490 ~ 6683316 (+) | True | LOC113547232 |
| XM_026947479.2 | mRNA | upstream | 1020 | 6680491 ~ 6683316 (+) | False | LOC113547232 |
| XM_026947481.2 | mRNA | upstream | 37180 | 6644528 ~ 6647156 (+) | False | LOC113547232 |
| XM_034303652.1 | mRNA | upstream | 81925 | 6580355 ~ 6602411 (+) | True | dhx30 |
| XM_034303772.1 | mRNA | downstream | 9109 | 6694941 ~ 6704346 (+) | True | LOC113547228 |
| XM_026947536.2 | mRNA | downstream | 22549 | 6708381 ~ 6713301 (+) | True | LOC113547277 |
| XM_026947537.2 | mRNA | downstream | 27975 | 6713807 ~ 6719716 (+) | True | LOC113547278 |
| XM_026947535.2 | mRNA | downstream | 47752 | 6733584 ~ 6737199 (+) | True | LOC113547276 |
| XM_026947533.2 | mRNA | downstream | 54741 | 6740573 ~ 6755800 (+) | True | gpaa1 |
| XR_004578001.1 | other | upstream | 87775 | 6595126 ~ 6596561 (+) | False | LOC117597080 |
| trnar-ucu_1 | other | upstream | 253759 | 6430486 ~ 6430577 (+) | True | trnar-ucu_1 |
| trnat-ugu_2 | other | upstream | 540699 | 6143565 ~ 6143637 (+) | False | trnat-ugu_2 |
| trnat-ugu_1 | other | upstream | 544964 | 6139300 ~ 6139372 (+) | True | trnat-ugu_1 |
| TU70896 | other | upstream | 1088210 | 5580144 ~ 5596126 (+) | False | LOC113547291 |
| XR_003402765.2 | other | downstream | 1370224 | 8056056 ~ 8062839 (+) | False | LOC113526345 |
| XR_004578049.1 | other | downstream | 2009520 | 8695352 ~ 8724440 (+) | True | LOC117597156 |
| TU72678 | other | downstream | 2208638 | 8894470 ~ 8896729 (+) | True | G61359 |
| XR_004578067.1 | other | downstream | 3072628 | 9758460 ~ 9774049 (+) | False | rbm14b |
| XR_003403991.2 | other | downstream | 3121489 | 9807321 ~ 9832280 (+) | False | gal3st3 |
