RNA id: XM_034303772.1


Basic Information

Item Value
RNA id XM_034303772.1
length 4757
RNA type mRNA
GC content 0.46
exon number 6
gene id LOC113547228
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 6684336 ~ 6704346 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tagattatgtatatagaaatatagactatgtacatctgtatgtgtgagtgtgcaatattgacttgtgcaaaacagcAGTAAAGTAACATGTGCAATGTTGAATTGTGCAAAACAGTATTATAGACAGTAATGTGTTCCCATGTAGCAGTAATATGTagtatatctctatgtgcaatatcaacttatgtacaaaacaatagtacagtaacctgtagcaaattgagtgcaactacacaataataatagcagctgtcacatttaacaatgtgcaaaACAAGATGAAGCTTCTCGATAAGAAGatagcagcagtaacatttacaaatgtgcaaattcAGCTGTAGCAGTTCAGTCCATCTATTCTATGAGATATGTGAGACTAGTCTGTGTCCACTGGCTACCCATTTAAAAGTCTAATGgctgaggggaagaaggagttccttagtctggaggttctgcatttcacactcctgtacCTCCGTCCTGAGGGTAGGAGTGTGAACAGTCCGTGTTGTGGGTGGGTTGGGTCCTTAAGGATGGAGGCAGCTCTCCTGTGGACTCCTGTGCAGAGAGGGCAGTGGagtcctgatgatcttctcagcagtCTTCACCACTTTCTGCAGACATTTGCGGTCCCTAACTGTAGTActgccataccacacagtgatgcagctggtcaagACGCTCTCAACAACACAGCTGTAGAAGTTGTTGAGGATCTTAGGTGCCAAACTTCCTGAGCCTCCTTAGGAAGTACAGCCGCTGTTGTGCTTTCTTAACCAGCTGGGTGGTGTTGAGTGTCCAGGTGAGGTCCTCGCTGATGTGGACccccaaatatttaaagctgctcACCCTCTCCACTTCAAGCTCTCGGATAAACAGTGGCTGATGcgttctcctctctttcttcatgtccactatcatctccttTGTCTTGTCCATGTTGAGGGTGAGGTTGTTGTCCTCACACCATGTCACAAGACTGGCCACCTCCCTTCTGTAGGCTGCTTCATCTCCGCCAGTGATCCGTCCTATCACAGTGGTGTCGTCAGCGAACTTCACGATGATATTTTCCTTGTGGGAGGCGACACAGTcgtgtgtgaacagtgtgtagaggATGGGACTGAGAACACACCCCTGTGGGGTGCCAATGTTTGTAATGATGGTGTCTGAGGTCCTCTTTCCAATCCTGACAGACTGTTGTCTACCAGTAAGGAAATCTAGGAGCTAGTCGCAGAGTGTGGGGTGTAGTCCAAGTGCAAACAGTGGGTGAGTTTATGGGGGATGACCATGTTGAAGGCAGAACTGTAGTCGATAAAGAGCATCCTGATGTAGGTGTCCTTATCTTCCGGGTGAGAGAGGGAAATATGGAGGGCAGCAGCAATGGCGTCTGAGATGGACCTGTTGGTGCTCTGAATGTGGTTCAGCACCACTCTCTCAAAACACTGCATAATGATTGGAGTGAGTGCTACTGGCCTGTAGTCATTCAGACAGGTTGGGTGGCTCTTCTTGGGAAGGGGGATGATGGTTGTGGTTTTGAAGCAGGTTGGGACGGTCCTTTGACTGAGGGAGAGGTTAAAGATGGAAGTGAGAACATCAGCCAGTTCTGTAGCACAAGCTCTGAGGGCCCGCCCAGGGATGTGGTCTGGCCCTGCTGCAGGGGTTGATCTTCCTCAGTGCCTTGTGTACCACAGCTGATGAGACAGTAGGAGGGGGGATTGGGTggtccgagtgtgtgtgtgtcctctctgtgtCGACGCTGGAGGTCTCGAAGCGGGCATAGAAAGTGTTGAGGTCATCTGACAGGCTGTCTGAAAGGCTGATAGTAGTGTTCGTGGTGGTCTTGTAGCCTGTGATGTGCTGCAGGCCTTTCCACATCCTTCCGGTGTCGGCAGTAGAGTAGAAGCTGTCCAGCTTCTCTCTGTACTGTCTTTTAGCCGCTGTAATGGCTCTTCTCAGTCCGTACTTTGCAGCTTTGTACTCATTGCCTGATGTAAATGCAAGAGATCGAGCACGCAGCATGTGGCGTACCTGACTGTTTATCCAGGGCTTCTGATTGGGGAACTTCCTGACTTGTATGGTGGGTACGATGTTATCAACACAAGTGCTAATGTACCCAGTCACATACTCAGCATAATCCTGTATGCTGACAGAAGAGTCCTCCAGAGTGGCTGCAGCTTTAAACACATCCCAGTCTGTCAGGGCAAAGCAGTCCTGCATGATGCCCTCGGTCTCTGGGGTCCAGAGCTTAACTGCACTGATTAAAGTCGCCAGCAGCGATAAAAACAGCATCAGGATGAGCCGTCTCTAGTGCGCTGAAAACGTCGTGGAGCTTGCTGAGCGCGGCTGTGGAGTTGGCTCGTGGAGGGATGTAAACAGCGGCTATAAACACAGCAGTGAATTCCCTTGGTAGATAATAGGGACGGCATTTCAACAATAAAAACTCCACATCTGGCGAGCAGTGCTTATAAACAGTCTGTATGTCTCCACACCACGAGTTgttgataaacacacacacctccccctTTAGCCTTACCGGAGGCTGCGGTCCAGTCTCCTCGGTGTAAGGAGTGAGACTGTAGCTGAACAGAGGATTCCGGTACTTTCTCTGAGAGCCAGGTCTCGGTAAAAATCAGAGCGCAGCATTCTCTTACTTCCCGTTGTGATGTGATCCTTGCTCTCAGCTCGTCCAGTTTGTTTTCCAGAGACCGCACGTTAGCTAACAAGAGGCTGGGTAGCGGTGGTCTGCTAGCACAGGCCTTTAGCCTAGCATGAAGCCCTCCCCTCTTGCCTCGCTTGCGTCGCCTTCTCCGGAGCACTCTCCTCGGGTCAGCTACCTCGCTCGAGCTCAGTGCTTCAAGGCCTTCCTGGGGATGGTGGCGGTGGCTGGGGGAGCGGATAATGAGTTGTAGTTCCGGAGGTATAAAACAGGTAAATTCAAAATGGTTGGCTGAATTGGCGATGTCCAGCAATGCCTGTCTGTTGTATGTTAGCAGTGCATTGCATTTGTGCACTGCGgtgaaaacaagaaacaaacaaaaaagaagaaaaaactggCATTCGAGTGGGGAGCGAGCAAACTCGTCTGCCTCGGGGGGCGCCATTAAGGAGCTCATACTTGTACAGCCTGTCCACGTTCACTTCCCATCCCAACTTATCACACAAATAGACACCCAGGTACGTGTAGGAGTTACCTCGATGTTCTCACCCTGGGTGGTGACAGGAGCTGGAGGTGACTTCATCCCAAATCCACCATGAGCTCCTTTCTCTTCCTGGTGTGTATTTAGAGACAGTTGCACTCACACCTGTCCACAAAGCTGTTCACCAGGATCCTGtactcctcctccctcccctcAATAATAGACAACACAGTAACTGTCATCTGAGAACTTTTGTAGATGATACATCTCAGAATTATACCTGAATTCAGAGGTGTCCAAAGTGAAAAGAAAGGGGAACTGTATAGTCTCCTGGGGAGCACCTGTGCTGCTTACGAACGGCTCTGACACACAGTTCTATAGCCGCACATACTGGGGACTgctggtcaggttttttttttttcagtgaaagggataaaattaaaattacttATGAAACTAATacgatatgaaatatgaaaataatataataaattgatCTTCCAGTGACCCTGAGGGTTTTCACAGGCTTTTCCAATTTTCTCAATTTTAGTTGTACTATAGACTATACTACATTGCccatatgtgtgaatgtgtgttcatgATGCACTGCAATGGCCCGGTGTTCCATTCAGAATGCATTCCTGCTTTttgtccagtgttcccagaatcCACCATAACCCTGTCCAGGATCacacagttactgaagatgaatgaatcaatgattTACTGAACATACAGTGCCAAGGAAGCTTTGATTTAAAACAATATGCAAAATTATTATACCTGAGTTAATGAGCATGGAATCATGCCAAAACTCTTTTTCCTTATCTAGAAACACTGTCTAAATCTTGATGCTTAACTCTTGGTCTTAATACACAATGAAAATTTATATCAGCTGGTTAAGGCCCTAATTCATGCTCACGACCACAAGGAGAATCCAACATGGCTGGGCCTTTCTAGCTGTCAGAAGggcaccatgcagacacacattcattcacacctactgGCCTATTTTGGGAGGTGggtggaaaccagagaacccacacAAACACGGAAGTTTCTATCAGCATCACTATATAAGCAGCACCACTTACCTGAGTGTTTTACATCAAGCAAGAAGAGACTCCTAATTAGATATAAGTGGAATTTTGGTGAGaAACACTGTCTGAAACTCGATGCACACTTAATCTCAATACACAGCGAAAATGAATATCAGCTGGTTAAGGCTCTTATCCGTGCTCATGACGCCCAGGAGAAGCCAACATGGATCGGCCTCACTGGCTGTCAGAAGAGGAATAACTTCTTTTGGTCTGATGGCACCAAAGTGACTTTCACCAAGTGGAATCCAACTGAACCAAATTTTCTACCTGGAGAGGGCTGTGTGCATACGAACTGGTCTAGCAGTAAGAACTGGAATGACATTCCATGCGATCAGACCTATTCCTTTGTGTGCGCCAAGAGAATTAACTGAAATGCTCCCAGCCTCACCTCACCAACTATAATACAATGTTGGAAaatttttccttgtcactgatGAACTGTGGCAACTTATCATAATTACAGCAATaagaaaaaatctaaaaaataaataaataaataatttttttcatttcaatttca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU71586 lncRNA upstream 9109 6684336 ~ 6685832 (+) False LOC113547228
XR_003404802.2 lncRNA upstream 43095 6648782 ~ 6651846 (+) True LOC113547233
XR_004578118.1 lncRNA upstream 71290 6622836 ~ 6623651 (+) True LOC113547253
TU71549 lncRNA upstream 98340 6595126 ~ 6596601 (+) True LOC117597080
TU71422 lncRNA upstream 268597 6426119 ~ 6426344 (+) True G60384
TU71609 lncRNA downstream 84874 6789220 ~ 6797109 (+) True G60529
XR_004577961.1 lncRNA downstream 98110 6802456 ~ 6805176 (+) False LOC113527002
XR_003402827.2 lncRNA downstream 99521 6803867 ~ 6805176 (+) True LOC113527002
TU71618 lncRNA downstream 105820 6810166 ~ 6812401 (+) True G60536
TU71634 lncRNA downstream 172685 6877031 ~ 6895222 (+) True G60548
XM_034303774.1 mRNA upstream 11625 6644647 ~ 6683316 (+) False LOC113547232
XM_026947478.2 mRNA upstream 11625 6680490 ~ 6683316 (+) True LOC113547232
XM_026947479.2 mRNA upstream 11625 6680491 ~ 6683316 (+) False LOC113547232
XM_026947481.2 mRNA upstream 47785 6644528 ~ 6647156 (+) False LOC113547232
XM_034303652.1 mRNA upstream 92530 6580355 ~ 6602411 (+) True dhx30
XM_026947536.2 mRNA downstream 4035 6708381 ~ 6713301 (+) True LOC113547277
XM_026947537.2 mRNA downstream 9461 6713807 ~ 6719716 (+) True LOC113547278
XM_026947535.2 mRNA downstream 29238 6733584 ~ 6737199 (+) True LOC113547276
XM_026947533.2 mRNA downstream 36227 6740573 ~ 6755800 (+) True gpaa1
XM_034304127.1 mRNA downstream 36445 6740791 ~ 6755800 (+) False gpaa1
XR_004578001.1 other upstream 98380 6595126 ~ 6596561 (+) False LOC117597080
trnar-ucu_1 other upstream 264364 6430486 ~ 6430577 (+) True trnar-ucu_1
trnat-ugu_2 other upstream 551304 6143565 ~ 6143637 (+) False trnat-ugu_2
trnat-ugu_1 other upstream 555569 6139300 ~ 6139372 (+) True trnat-ugu_1
TU70896 other upstream 1098815 5580144 ~ 5596126 (+) False LOC113547291
XR_003402765.2 other downstream 1351710 8056056 ~ 8062839 (+) False LOC113526345
XR_004578049.1 other downstream 1991006 8695352 ~ 8724440 (+) True LOC117597156
TU72678 other downstream 2190124 8894470 ~ 8896729 (+) True G61359
XR_004578067.1 other downstream 3054114 9758460 ~ 9774049 (+) False rbm14b
XR_003403991.2 other downstream 3102975 9807321 ~ 9832280 (+) False gal3st3

Expression Profile