Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU71641 |
| length | 213 |
| lncRNA type | inter_gene |
| GC content | 0.54 |
| exon number | 2 |
| gene id | G60554 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047598.1 |
| NCBI id | CM018544.1 |
| chromosome length | 33267568 |
| location | 6887151 ~ 6906198 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU71618 | lncRNA | upstream | 74750 | 6810166 ~ 6812401 (+) | True | G60536 |
| XR_004577961.1 | lncRNA | upstream | 81975 | 6802456 ~ 6805176 (+) | False | LOC113527002 |
| XR_003402827.2 | lncRNA | upstream | 81975 | 6803867 ~ 6805176 (+) | True | LOC113527002 |
| TU71609 | lncRNA | upstream | 90042 | 6789220 ~ 6797109 (+) | True | G60529 |
| TU71586 | lncRNA | upstream | 201319 | 6684336 ~ 6685832 (+) | False | LOC113547228 |
| XR_004577959.1 | lncRNA | downstream | 40127 | 6946325 ~ 6951805 (+) | True | LOC117596999 |
| TU71678 | lncRNA | downstream | 109889 | 7016087 ~ 7033495 (+) | True | G60580 |
| TU71670 | lncRNA | downstream | 186199 | 7092397 ~ 7097163 (+) | False | G60576 |
| TU71672 | lncRNA | downstream | 186199 | 7092397 ~ 7097163 (+) | True | G60576 |
| TU71862 | lncRNA | downstream | 324453 | 7230651 ~ 7230925 (+) | True | G60722 |
| XM_026947458.2 | mRNA | upstream | 118415 | 6759401 ~ 6768736 (+) | True | sharpin |
| XM_026947533.2 | mRNA | upstream | 131351 | 6740573 ~ 6755800 (+) | True | gpaa1 |
| XM_034304127.1 | mRNA | upstream | 131351 | 6740791 ~ 6755800 (+) | False | gpaa1 |
| XM_026947534.2 | mRNA | upstream | 131351 | 6742675 ~ 6755800 (+) | False | gpaa1 |
| XM_026947535.2 | mRNA | upstream | 149952 | 6733584 ~ 6737199 (+) | True | LOC113547276 |
| XM_026913759.2 | mRNA | downstream | 330872 | 7237070 ~ 7334917 (+) | True | LOC113526581 |
| XM_026914101.2 | mRNA | downstream | 490612 | 7396810 ~ 7405618 (+) | True | LOC113526768 |
| XM_026913509.2 | mRNA | downstream | 517362 | 7423560 ~ 7442254 (+) | True | LOC113526462 |
| XM_026913850.2 | mRNA | downstream | 576030 | 7482228 ~ 7530675 (+) | False | ss18 |
| XM_026913851.2 | mRNA | downstream | 576031 | 7482229 ~ 7500704 (+) | True | ss18 |
| XR_004578001.1 | other | upstream | 290590 | 6595126 ~ 6596561 (+) | False | LOC117597080 |
| trnar-ucu_1 | other | upstream | 456574 | 6430486 ~ 6430577 (+) | True | trnar-ucu_1 |
| trnat-ugu_2 | other | upstream | 743514 | 6143565 ~ 6143637 (+) | False | trnat-ugu_2 |
| trnat-ugu_1 | other | upstream | 747779 | 6139300 ~ 6139372 (+) | True | trnat-ugu_1 |
| TU70896 | other | upstream | 1291025 | 5580144 ~ 5596126 (+) | False | LOC113547291 |
| XR_003402765.2 | other | downstream | 1149858 | 8056056 ~ 8062839 (+) | False | LOC113526345 |
| XR_004578049.1 | other | downstream | 1789154 | 8695352 ~ 8724440 (+) | True | LOC117597156 |
| TU72678 | other | downstream | 1988272 | 8894470 ~ 8896729 (+) | True | G61359 |
| XR_004578067.1 | other | downstream | 2852262 | 9758460 ~ 9774049 (+) | False | rbm14b |
| XR_003403991.2 | other | downstream | 2901123 | 9807321 ~ 9832280 (+) | False | gal3st3 |
