RNA id: TU71670


Basic Information

Item Value
RNA id TU71670
length 4728
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id G60576
representative False

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 7092397 ~ 7097163 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gcataaatcAACTAcaccaatgattaaaaaaaacagcatcccATTTTCATATTAGTGTTCATATTGGTAACCAATCATTCTTGATATTACAATCACGGTTACTTCATGggtttctgaaaataaaaataagtaaatgttaaaattaaacatgCTATTCAAATCAAGCACTCTTTActtatgctaaaaaaaacccCTCCATCGCAAATCATTATAATTACTGGTTAAAATAATGATCATATGTTAATGCTGGCAACAGAGATTGGTGACCTTGACATAAATCCCTTTTTGCGCACCTCTAAGTTTCATGATCTACATTTAAAACAGCGCAGCCCTTCACCATAGAGAACAGCAACAACACTTTAAAGTAGAGGTGTGTGTCAGGAACTGAGCAAAAATTGGCAAGAGATTTTTACTTATTGCATTGTAGGAGAGGGCAAGGTTTGAGAGAATTCCTTCAGAAACAGGCAGGATTGTTCAAACCTTCTGCAGGAGTGGACAGAATTGTGAGAAATCCTTCAGGAATTGGCATGATTGTACAAAAATGCTTCAGGAATGGGCAGGATTAATCAAACTTTCTAAAGGATTGGGCGGGATTGTTCAGAAATCCTTCAGGAAtgagcaggattggtcagaactCCTTCAGGAATGGGTGggagtgggattttttttaaaaacaaaaaacagacctGCCACACTTCTACTCTGAAGTACTACATCAATCTTGGCTACAGCAGTCAGACAGAACATATCATgcaatatatacaatacaattgtgtactaaaaaaaaatgctcaaaaaaattaaaggaacactttgaaaacacatcacatCTCAAtttggaaaaatatcatgctgatatctatactgatatagactgggtaatgtgttaggaacaaaaggatgccacatcgtttgatggaaatgaaaattatcaacctacagagggctgaattcaaagacaccccgaaaatcaaagtgaaaagaTGAcgcagcaggctagtccattttgctgaaatttcactgcagcaactcaaaatggtactcagtagtttgtatggcccccacgtcggggcatgctcctaatgagatgacggatggtgtcctggggtatttcctcccagatctggaccagggcatcactgagctcctggacagtctgaggtgcaacctggcggcgtcggatggaccgaaacataatgtcccagaggtgttctattggatttaggtcaggcgagagtgggggccattcaatggtatcaattccttcatcctacATGAACTGCCTGCATACCCTTGCCACATGACTCCACgcattgtcgtgcaccaggaggaacccaggacccactgcaccagcgtagggtctgacaatgggtccaaggatttcatcccgatacctaatggcagtcagggtgccactGTCTAgcttgtagaggtgtgtgtgtccctccatggatatgcctccccagaccatcactgacccaccaccaaaccggtcatgttgaacgatgttacaggcaggTCTGGCAGtcctcatcctgttcctccttgcacaaaggagcagataccggtcctgctgatgggttaaggacctcctaaggccctgtccagctctcctagagtgactgcctgtctcctggaatctccttcatgctcttgagactgtgctgggagacacagcaaaccttctgccaatggcacgtattgatgtgccatcctggaggagttggactgtctgtgcaacctctgtagggtccaggtatcgcctcatgctaccagtagcgacactgaccctagccaaatgcaaaactagtgaaaaacagtcagaaaagatgagtagggaaaaaaatgtctgtggcctccacctgtaaaaccattcctgttttgggggttgtctcattgttgcccatctagcgcatctgttgttaatttcattaacaccaaagcagctgaaactgattaacaaccccctctgctacttaactgaccagatcaatatcataggagtttaactgacttgatgctatactctgattaaaaagtgttcctttaattttttttgagcagtatatatatatatatatatatatatatatttttaattgaattataCAGTCAAAATTGTCACGTCTTTTGTTACTATATGTCCAAGAAGTATGCACAAATCTGTCCGCATCACACAGGTTCTTCAGGTCTGGGACCAGTTGATCTGACAGCTGATAAACAGAGATGAAGATGACTGACAGGGTTGTGGCCTGGAACAACTCTCACAGCTTGCTGCCATAATGGGTTTAAAAACCACAGCAGAACAAACGATATTCCCATCAGTAGAtaacatatgcaaaaaaaaaaaaaaaaaaaaaaaatacagaagttCCTGTCTTGTATTGAAAACCTGGCTCTGAATCCAAAAGAAGAAACTAAGGATGGCTTCCAGTTTGTTCCAACATATTAATTAAGATTTTAATCAATCGTACAGCAGAAATTCATCCAATGCTTGTACCAATAGCATACAATCCTTGTGCAATTTAGAGTGTCAGTCACCTATAGACACTAAATGGAAATCATTTTAattccagtgttttattccagcaGGTGGCACTGCAGTGCTGTCATTCAGGGAGTgcataaataatcaaaatagcCACTTGTGTaatttgcgtgtgtgttttttgtgtgtgcaattatttttaaatcagtggAAAGGTTTCATAATGAAGATACAGTAATATGAGGGAAATGTTGTGCACTCTATTTCCATTACTGGCTtagaaatgggaaaaaagacAACTGAACAGAGAAACCAGAACAACTATCTGCTATCTGAAGATAGAAATAAACTGATGATACATATATTGTTGAGAAACCCATCTCTGTTACATGAAATGCACACCAGTATATCAAAAACTCCTAAAAAGCCTATCCTGCTAATTATTAGTGATGGACATTCTAGCTGAATACTCAGACACACGCCCACTACAATCAATTTAGTTACCCAGTACTGATTAAATTTTATAACAAACAGCTTGACATTATTTGTTTTACATAGCAGCACCAATTTATGCTAATAATAGAACATTAGTGTTATACTATAATAGAATAGTAGTGTTATGCATTCGTACTGCAAAAAACCataaaaagttaaagctgtgCTGctttcatgctctctctcttctccagaGGACATTACAGATCAAATTACCAACTGTTTTTTGACATACTGTGGATTTGTCTGATAATTTTACTGGTTATTTTACAGGCAAATTTGCCTGTTGCCATGAGAAATTGCAAAATCAGACAATTCAAACAAATTAGCGATCCTGTAGGCTGATTAAAGTGGCAATGACAGCTACAGGTACTATAAACTTGCTTTATATTTACACGTCATTATGTgatgaaaattttatttttccagtaataaatgaaagagcAGTTGATTTGAACATCTAACACTAGATATTGCCAAATATATAATTGCAAACAGTCCAATCAGGTTCTCTGTATTCAGAAACACTAATCCCATTCAAATATGACttagtaattagtaatattTTACTAATTGAGGCTGAATAACAGTATTTGATTAGTCAACTACTCATGGCAATCACTATGAATTACATTAATGGATCTTCAAAAAGTCTTCACCTTTCTCTTTGTTAGTTGTTCTCCAACTTGCTCTTCTGGGAATTCAGTTTGTGGCATGTGTGTCATAGCTGtagaatgtgtgagtgtgtctgtagTTGCATTAGGAGCTGGAGCTCGACTGGAAAATTTTCTCGACAACAGAAACCCTTTCCTCTCGCACCTCTTTGTGAGTGCCACCATTTGGCACATCAAATTGAGGCATGTCTTGCTGCAACAATGAAATGGCACTTGGGATATCTGATGCGTTTCCTAAAGCCATGATCCCTCCACTTTGCTCTTTGGCCTGCATACTCAGATTTTTGCTGGTGCTGGAGTGTGAGGAGCTCTGCACGACATGTACAGGCTCTGTGCTCTCAACTCGTCGGCTCTCTACGACCCGATAGGTACCAGAAACGGTGCCCTGAGTCTCAGGTTGGCCTGTGAACCCACGCACCACTGTGCCTCCAATACCTGGATCCACCAGTACTCTGGTGTTTGCTTGCTGCAACCCTAGCCTGGGAAGGGTGTTCTGGGCAGCAATTGCAACGTTGGTACCCCCTTTCTCCACCAGCACCACGTTGCTTTCCTGAACACCCAGCATTGGACCAGAAGCCAGAAGAAGGGTGGGGTGATGCTGTTGCTCCACTACGTACATGGGTGTAGAGGAAAGGTAGAGAGCTGGCTGCTGGACTAGAAGAGTTTGGCCTACAGTGGCAGCTGATGTGGCGCCTCCACTGATAATACTCTCTCCATAATTTGCAGTTGTGATTtgggtggtggaggaggagctgGATGCAGAGATGGAGGTTGCCTCACTGTGGACACCACCAACAGCATCTTCCATTTTGACACCCTCTTGTGAAATGGATGAGACCGTTTTGGGAGGCATGGTAGTGGAGCTGACCTCGAATTCGATGGTCGAGCCACAGCAAATTTCGGCGAGCCTTTTGAACTGAGGCCCGAGGTCATCGAGGAAATCCAGATTGTTTTCCTCATGTAGATGGCTGCAGATGTCCTCTAAGGAGCCTGTGACTGAGTTGCAGACTTCATAGTTAGAAAACATCAGCTGGTTTGTACTAGCTTCCTGCTTCACCATATCCAGCGTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU71678 lncRNA upstream 58902 7016087 ~ 7033495 (+) True G60580
XR_004577959.1 lncRNA upstream 140592 6946325 ~ 6951805 (+) True LOC117596999
TU71641 lncRNA upstream 186199 6887151 ~ 6906198 (+) True G60554
TU71634 lncRNA upstream 197175 6877031 ~ 6895222 (+) True G60548
TU71618 lncRNA upstream 279996 6810166 ~ 6812401 (+) True G60536
TU71862 lncRNA downstream 133488 7230651 ~ 7230925 (+) True G60722
TU71937 lncRNA downstream 388603 7485766 ~ 7486151 (+) True G60783
TU71959 lncRNA downstream 483672 7580835 ~ 7610190 (+) True G60801
TU71963 lncRNA downstream 496157 7593320 ~ 7617701 (+) False G60804
TU71962 lncRNA downstream 513860 7611023 ~ 7702098 (+) True G60804
XM_026947458.2 mRNA upstream 323661 6759401 ~ 6768736 (+) True sharpin
XM_026947533.2 mRNA upstream 336597 6740573 ~ 6755800 (+) True gpaa1
XM_034304127.1 mRNA upstream 336597 6740791 ~ 6755800 (+) False gpaa1
XM_026947534.2 mRNA upstream 336597 6742675 ~ 6755800 (+) False gpaa1
XM_026947535.2 mRNA upstream 355198 6733584 ~ 6737199 (+) True LOC113547276
XM_026913759.2 mRNA downstream 139907 7237070 ~ 7334917 (+) True LOC113526581
XM_026914101.2 mRNA downstream 299647 7396810 ~ 7405618 (+) True LOC113526768
XM_026913509.2 mRNA downstream 326397 7423560 ~ 7442254 (+) True LOC113526462
XM_026913850.2 mRNA downstream 385065 7482228 ~ 7530675 (+) False ss18
XM_026913851.2 mRNA downstream 385066 7482229 ~ 7500704 (+) True ss18
XR_004578001.1 other upstream 495836 6595126 ~ 6596561 (+) False LOC117597080
trnar-ucu_1 other upstream 661820 6430486 ~ 6430577 (+) True trnar-ucu_1
trnat-ugu_2 other upstream 948760 6143565 ~ 6143637 (+) False trnat-ugu_2
trnat-ugu_1 other upstream 953025 6139300 ~ 6139372 (+) True trnat-ugu_1
TU70896 other upstream 1496271 5580144 ~ 5596126 (+) False LOC113547291
XR_003402765.2 other downstream 958893 8056056 ~ 8062839 (+) False LOC113526345
XR_004578049.1 other downstream 1598189 8695352 ~ 8724440 (+) True LOC117597156
TU72678 other downstream 1797307 8894470 ~ 8896729 (+) True G61359
XR_004578067.1 other downstream 2661297 9758460 ~ 9774049 (+) False rbm14b
XR_003403991.2 other downstream 2710158 9807321 ~ 9832280 (+) False gal3st3

Expression Profile