RNA id: TU71962


Basic Information

Item Value
RNA id TU71962
length 4235
lncRNA type sense_over
GC content 0.39
exon number 2
gene id G60804
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 7593320 ~ 7702098 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CGCACATTTACTGTACAGCTGGCCTCTCTGTGTGAGGCAGAACCGTGGGCTGCTACCAAGCGTGAGGAGATgagaagcagagagatgagaacAGGAGAGACAAGAGATTCCATCCTGCTTCCTCGTTCCTGCCTTCTGTTTTAAATCAAATTCGTTTCGATTTCCAGCCTGACACCCATCCCCGCTCCTCCTCTGCTGTGTACGTCTGCATTACATGCATGCTTTGTcttggaaaaaagagaaaagcagacGTAATTTGCTGCCTAGAATTGAGAACACAAATTATCCATGACACTGTTGTCTGAGGATCTCATGGGAATAGTTTGAGCGATGACGTGTTTACTAAATGTTAACTGACTATATAACAAATACACCCCATCAAGATGGTGCCAGGGGGATTGCACGGACTGCGATATTATAATACATATTGGGGTcgtagagatttttttttgggatcTTTGGGTTTATATCAATTCATATAGTGTCAAATAGATTCTCTGCTGATTTTATTCTAATTTCAGTTGTTGATTCTAATACCCAAAGCTAGAAAATGCGGACCGGTCACAATAAATCCAAAGACTAATGTAGAATAAAATTCTCAATGTTAGCACAATTCCTCTTTAGTGTGCACCAAAGCACTGACAGTAAAGTGAGCATGagggagaaaaatagagagaaagagagagagagagacagagagagacagatataagTCATTGATCAGGAAGGTGTGTGTAATTGCTTATTAACACAGCCACACTTCACTGCACAGAGGTGACTGCACTAATGAATGGAGAGGCGTTATTAATCACCAATTAATAAAAATGGGGTGGCTGCTCAATCTATGCTACACATGACCTGCTCAGCATGCTCAGCGTCACTCGGTCGAattcctcttttttccccctgaaaaTCGATGTGCACTACTAGACGCTCCTCACATTTACCttggtctgtctgtctatctgcttGAATCGAAGTTATTTTATTAGTGATGTAGATTGTTCATAGTTTAGCAGCGAAGAGTGTGAATGCTGTCTGCTTCCTGTTACGAATGGAAAATGTTCAAGCTTTCTTTGCTGGACTTTCAGCTGAAGTCTATCAGCATTGTATTGTATCAGTAgatatattcatacatttatttgcttttacctgccatgtttatgtgtttatgtttgctcctatgctttatttctcttataaaagttatttttatatacaaattattaaagGAAATGGTTTGAAAATTCAAAAAAATATCTTGGAAACGCTATGCATGTTTTCCTTGTTTGCTGGGCCACTTAATTAACTGAACatagaaaatttgaaaaatttagaaaatgtctttttttggcAGGGAAAGGTCAAGTCCtcatatttttagatttaattttagttttttattatttgttaatgtattttatagtccatttcttatcttatttgatttttaatgatattatgattttttaaatactatttcttttcgatttatttatttatttacttttattatatttggtCTGTTATTAATCCCTTCTAAAGAGTTTTTCCTTTTGATGATCCACTTAAATACCTTTAAAACAAGTCTTCACTCAGATTTTGATAGGCACCTTTCATCACCTCTGTGACTTTAGTCACTCCTTTCTCAAGCCGCCAGAGGTGAAAGACCCCTCTGTGCTTTCACCCCGAGTTCCTGCGCATGTTTTATTGATGGTGAGCGACGAAGGGGCCGCATTACATTAGCAGTCTTAATGCCACCCCTTGTTCTGAAGCTGAATGTTTAGGATTAAGTACTGGCTCATAACGTTCAGCCTTCCAAATGTCCGGACATGGAGGAAGGCATTGAGTGGTCATACCATCATGTTGGAATGGAAAGCCGCCCAAGACCAAGGTTAGAGAGGAAGTTGGACATGGAAAACTGGCCTTGTCCCAAAAACCCCTTAACTCTGAATGGAATCTCGCTCCCTATGTGGCGTCTTTGATGGGTTTGGCAGTTAtcagtttttttcctctgtctcctGTTCCCATATgtacaaagaaagagaaaaggtcAAGGCCGAGACATCATTCACACTTAGATCGCTTGGCTTCAGTCAGTTGGCTTTGAAAGGGCAGATCCGACAGCCGGTATTCTGTCTCTGACTGATTTATGGGGTAACGTAGAGTAACACTTCTCAAGCTCTCTTCCACAAAATCGATCTTAAAGTACTTTTGTGAGTTTAGATTTCCAGAGTTGTTTTACTGATGATGTTTTGTTTCGTGGTATGGCGTGTAATATGCTACTAAATGAATTAGTTATgcattttacaaattaacaGACATAagtactatattatattattaaatgatattagatttatgcatatttattgtgtatgtatctatatatgcatgtgttttCACACATATTTGCTTTACAATATGTCAGTTTTTATGTCCGTGTGTTTATGGTATACatgcatgcagtgtgtgtatgcactttaacgtgtgtgtgtgtgtgtgtgtggtttaataATAAGGAGAGAGTGGTTTGGGTGGTGCGGCTGAATGCCAGGCACATGGATGGCCATGGCAAGGTCAACAGCGCAGAAGAGGCGCAGTTACTGCACCCTCCACTCCTGCAGCTGAGAGAGGAGAGGGCCAGCCATCTGTCCACTCCTGCCTGCCATACCCGcagagcacacacatacacacactaacacacacactcactcactcagtcactcacaaacgacacatacacacacaaacactctggCACACAATCACACTGTAATTCACAAACACAGATGCACGCATGCAGCACAcatgacacaaacacagacacaacacaTCCAAGACAAATATGGATGAGCAAATACGGCCATATGCACAAAGCACACATTCAGCTATGATGTTTTAGAAGCTAGACTGCATGTCAATAGATGTGACGGTGACTTTGAAGGCCAGGATGGCTAGTGATCACATGTAATACGAGTCACtgatgttccaaaacattaaatgtaactatgtacaatgtgttgttctttaataaatttagaaTTCTTAGTGTTGATGTGATataaaaggagtaaaacaccacgggatgtgctgttatgggaaaataatcaacttctgggtggtaacggTAACTCCGCCTcattacaccaccccatcactgtttattttcctataacagcatacccccaagtgtttcattcctcacCTACAGTAGATATATTGAAACCATAGTAtaggtatgtatgtattatgGTTTTATACGAGTTTTATCTTAGTAAGCTAAAGCAATTTACTAAATGCAATAAACCACTAAAAGTTAATCAAGCTTGTTAAATTGTCGAATCAAGCTTGTTAAAGAGAAAAGTATAAACTTTTCAGTGCTTTAGAAGATTTCTGAAGTCCTTTGTGTTATCTTTTATAATGTCATGCATGACTCCAGGTCAATTAAATACTCTAGATATGACTAAACAGTTATAATCAGGGGTACTAAAGGCCAGGGTCCTCATCTTCCCAAagccaggtgtttttttttttttttttttttttcacgtcaACAGTGAGACATTTTCATCGAGAGATTTTTGCCTTTAATGCGACCaacttcttcttgtttttcacCTTGCCGAGGCCCCCCGGGGTCAGCTGGAGAACGGGCTGCTGATTAGCGCAGCTCTCTCTTGCGAAGACCTTTACGATGCCCTCTGGCCGCAGCGGTAGAACCCTGTGGAATGTTCCAAAGCTCTCTAATAGGTTTCAGGTGCTTCAGGCCAACGGCCAGCCGCCAAGTCTCCCCCAGTCCCCAGCCAGTGCgccactatttatttatatcctcCTGAACTACCTGATAGCCATAATGCAAAGGGTTATCTAGTAGAGTTAGACCTTGACAGGATGCAAATAATAGCGAGGTCGGGTGATTCGATAATTATGTCAAAGTTTGTTGTATGTGTAAGCAAAAGTTCTTGTTTTGTGTACTTCGAAAATTAGTTGACATTCAGCATCAGGGCAATCATTGACGTGGAATGAATGAAAGCACATTTTTAAGTAGTTTTaacattctcatttttttcagtcttgGTAATGGCAAATCCTTAAAATTGTGGTAAAATTCCCACATATGACCTCATGTCACCTGGCAAACTTATTAACTGGCAAACATAACTGGCAGTTTCTGAACAACTTTCTGTAGAAGGCTAAgcttcacacttttttttttattttttttttttttg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU71959 lncRNA upstream 833 7580835 ~ 7610190 (+) True G60801
TU71937 lncRNA upstream 124872 7485766 ~ 7486151 (+) True G60783
TU71862 lncRNA upstream 380098 7230651 ~ 7230925 (+) True G60722
TU71670 lncRNA upstream 513860 7092397 ~ 7097163 (+) False G60576
TU71672 lncRNA upstream 513860 7092397 ~ 7097163 (+) True G60576
TU72112 lncRNA downstream 84116 7786214 ~ 7786635 (+) True G60931
TU72113 lncRNA downstream 84169 7786267 ~ 7786635 (+) False G60931
TU72309 lncRNA downstream 407380 8109478 ~ 8110443 (+) True G61096
TU72311 lncRNA downstream 415610 8117708 ~ 8118851 (+) True G61098
TU72411 lncRNA downstream 515996 8218094 ~ 8238482 (+) True G61162
XM_026913850.2 mRNA upstream 80348 7482228 ~ 7530675 (+) False ss18
XM_026913851.2 mRNA upstream 110319 7482229 ~ 7500704 (+) True ss18
XM_026913848.2 mRNA upstream 110319 7482229 ~ 7500704 (+) False ss18
XM_026913509.2 mRNA upstream 168769 7423560 ~ 7442254 (+) True LOC113526462
XM_026914101.2 mRNA upstream 205405 7396810 ~ 7405618 (+) True LOC113526768
XM_026913884.2 mRNA downstream 41333 7743431 ~ 7786176 (+) True LOC113526636
XM_026914108.2 mRNA downstream 88729 7790827 ~ 7810568 (+) True LOC113526772
XM_026914109.2 mRNA downstream 88729 7790827 ~ 7810568 (+) False LOC113526772
XM_034303615.1 mRNA downstream 235416 7937514 ~ 8008440 (+) True cacna1eb
XM_026914074.2 mRNA downstream 309872 8011970 ~ 8014519 (+) True polr2d
XR_004578001.1 other upstream 1014462 6595126 ~ 6596561 (+) False LOC117597080
trnar-ucu_1 other upstream 1180446 6430486 ~ 6430577 (+) True trnar-ucu_1
trnat-ugu_2 other upstream 1467386 6143565 ~ 6143637 (+) False trnat-ugu_2
trnat-ugu_1 other upstream 1471651 6139300 ~ 6139372 (+) True trnat-ugu_1
TU70896 other upstream 2014897 5580144 ~ 5596126 (+) False LOC113547291
XR_003402765.2 other downstream 353958 8056056 ~ 8062839 (+) False LOC113526345
XR_004578049.1 other downstream 993254 8695352 ~ 8724440 (+) True LOC117597156
TU72678 other downstream 1192372 8894470 ~ 8896729 (+) True G61359
XR_004578067.1 other downstream 2056362 9758460 ~ 9774049 (+) False rbm14b
XR_003403991.2 other downstream 2105223 9807321 ~ 9832280 (+) False gal3st3

Expression Profile