RNA id: TU72015


Basic Information

Item Value
RNA id TU72015
length 514
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id G60852
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 7483121 ~ 7483703 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTTTTCCTTTATCACATCCTCAAGGTTTTAGTTTCTGATTTCTTGGCGCCAGtttgagaagaagaagaaaccagTTCGAGGCAGAGCTATCGTAGACCTTGTGGTCCAGTAACTTTGCGTAACCCTGTCTTTACTCCTCCTTCGTAAAACCGTGGATCTTCCTTCTCGCCAAAGCCAACCATGTGTTAGAGCTCTGCAGCACATGATGTGTGATTTACCTGACTTGCCCTTTTATCAGATTCACTGAggcgtaataataataaaaaaaagaccttttCGATTGAGCTTCTGGACTCTCTCTGCTCTTCTTCAGGGGGGAATTATATAGTAAGAATATATTTTCTACTAAAAAGTATATAGTCTCTGGAGTAAACTTACACCTAATCATAGCACAGGATGTAGGACTGAAATGGAGTTAATCCTAGTACTACTGGGATTGAATGGATTTGACAACAATCTGAAGGAGCTGAGGAagtaaaaaataacaaaccaaGATGTTAATGAAGCTAAATTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU71866 lncRNA downstream 236685 7242125 ~ 7246436 (-) True G60726
TU71867 lncRNA downstream 252217 7230654 ~ 7230904 (-) True G60727
TU71790 lncRNA downstream 601786 6878644 ~ 6881335 (-) True G60669
TU71799 lncRNA downstream 690169 6785327 ~ 6792952 (-) True G60672
TU71581 lncRNA downstream 840936 6641971 ~ 6642185 (-) True G60503
TU71992 lncRNA upstream 11699 7495402 ~ 7500703 (-) True G60830
TU72349 lncRNA upstream 532253 8015956 ~ 8016183 (-) True G61127
TU72403 lncRNA upstream 618741 8102444 ~ 8104225 (-) True G61154
TU72380 lncRNA upstream 622189 8105892 ~ 8106414 (-) True G61139
TU72443 lncRNA upstream 756285 8239988 ~ 8245664 (-) True G61190
XM_034303902.1 mRNA downstream 365047 7095820 ~ 7118074 (-) True dsg2l
XM_034303903.1 mRNA downstream 374154 7095820 ~ 7108967 (-) False dsg2l
XM_034304126.1 mRNA downstream 401121 7049124 ~ 7082000 (-) True LOC113526634
XM_026914035.2 mRNA downstream 440332 7021733 ~ 7042789 (-) True prkacbb
XM_026914102.2 mRNA downstream 464844 7015028 ~ 7018277 (-) True exosc4
XM_026913631.2 mRNA upstream 213197 7696900 ~ 7727146 (-) True LOC113526521
XM_034303614.1 mRNA upstream 327952 7811655 ~ 7918897 (-) True si:ch211-241e1.3
XM_026913409.2 mRNA upstream 581499 8065202 ~ 8078853 (-) True rpe65a
XM_034303865.1 mRNA upstream 623190 8106893 ~ 8118886 (-) True efcab14
XM_026913530.2 mRNA upstream 963680 8447383 ~ 8450998 (-) False LOC113526472
TU71817 other downstream 583894 6882469 ~ 6899227 (-) False LOC117597002
trnae-cuc_12 other downstream 1039306 6443744 ~ 6443815 (-) True trnae-cuc_12
trnak-cuu_3 other downstream 1302162 6180887 ~ 6180959 (-) True trnak-cuu_3
TU71184 other downstream 1523576 5900249 ~ 5959545 (-) False G60166
TU71182 other downstream 1552922 5900249 ~ 5930199 (-) True G60166
XR_004578041.1 other upstream 1091803 8575506 ~ 8578850 (-) False LOC113526753
TU72820 other upstream 1499531 8983234 ~ 8984453 (-) True G61478
XR_003403995.2 other upstream 1831146 9314849 ~ 9327431 (-) False LOC113540087
TU72884 other upstream 1854123 9337826 ~ 9338745 (-) True G61537
TU73323 other upstream 2042871 9526574 ~ 9528803 (-) False LOC113526752

Expression Profile