RNA id: TU72380


Basic Information

Item Value
RNA id TU72380
length 523
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G61139
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 8105892 ~ 8106414 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ccaGTTGAGTTTGATTATTAAAGGATTATtagcatgtaaacgtagctagtATATCATACTATGGAGAAGcttggtgaaaaataaaaagtgaaatgcAGTACACAAACAGCATTGCTTCTCTTTAATGACATGCagaaaacattacacactgaaaagcaaaaccttcttTGCATTGCTCTTATGAAAGCAGCAGGAATGAAGATCCAATGAGCCAGTAAGAAACTATAGAGAGTGCTCTTTCAGGCTGAGTACAACCACGCCCCCAAGTTAGGGCTGTGACTGAagagtgattgcatttcagtgtggcacgacTGCAGCGCACTGATGAAAGTAAAACGCAATTAGATTCATTTCTGACTGAACTCAGCATTTAATACCTACAAAGCAAAACCTCGCCGGTTGTTTTTCCCTGGAGAGACAAAATGACGTAAAAGGCAATGgaatgaaggttttgcttttcagtgtggaacGTTTTCTGCATGTCGCTACTGAAAAGCAATACAGCTTGTGTATTGTATCGCAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU72403 lncRNA downstream 1667 8102444 ~ 8104225 (-) True G61154
TU72349 lncRNA downstream 89709 8015956 ~ 8016183 (-) True G61127
TU72009 lncRNA downstream 567074 7441262 ~ 7538818 (-) True G60846
TU71992 lncRNA downstream 605189 7495402 ~ 7500703 (-) True G60830
TU72015 lncRNA downstream 622189 7483121 ~ 7483703 (-) True G60852
TU72443 lncRNA upstream 133574 8239988 ~ 8245664 (-) True G61190
TU72481 lncRNA upstream 240742 8347156 ~ 8353286 (-) True G61220
TU72551 lncRNA upstream 314526 8420940 ~ 8495027 (-) True G61275
TU72549 lncRNA upstream 346378 8452792 ~ 8551855 (-) False LOC113526822
TU72568 lncRNA upstream 373489 8479903 ~ 8550102 (-) True G61286
XM_026913409.2 mRNA downstream 27039 8065202 ~ 8078853 (-) True rpe65a
XM_034303614.1 mRNA downstream 186995 7811655 ~ 7918897 (-) True si:ch211-241e1.3
XM_026913631.2 mRNA downstream 378746 7696900 ~ 7727146 (-) True LOC113526521
XM_034303902.1 mRNA downstream 987818 7095820 ~ 7118074 (-) True dsg2l
XM_034303865.1 mRNA upstream 479 8106893 ~ 8118886 (-) True efcab14
XM_026913530.2 mRNA upstream 340969 8447383 ~ 8450998 (-) False LOC113526472
XM_026913531.2 mRNA upstream 340969 8447383 ~ 8450914 (-) True LOC113526472
XM_026914208.2 mRNA upstream 346196 8452610 ~ 8462244 (-) True LOC113526822
XM_034303306.1 mRNA upstream 437862 8544276 ~ 8561032 (-) False LOC117596993
TU71817 other downstream 1206665 6882469 ~ 6899227 (-) False LOC117597002
trnae-cuc_12 other downstream 1662077 6443744 ~ 6443815 (-) True trnae-cuc_12
trnak-cuu_3 other downstream 1924933 6180887 ~ 6180959 (-) True trnak-cuu_3
TU71184 other downstream 2146347 5900249 ~ 5959545 (-) False G60166
TU71182 other downstream 2175693 5900249 ~ 5930199 (-) True G60166
XR_004578041.1 other upstream 469092 8575506 ~ 8578850 (-) False LOC113526753
TU72820 other upstream 876820 8983234 ~ 8984453 (-) True G61478
XR_003403995.2 other upstream 1208435 9314849 ~ 9327431 (-) False LOC113540087
TU72884 other upstream 1231412 9337826 ~ 9338745 (-) True G61537
TU73323 other upstream 1420160 9526574 ~ 9528803 (-) False LOC113526752

Expression Profile