RNA id: TU72411


Basic Information

Item Value
RNA id TU72411
length 3344
lncRNA type sense_over
GC content 0.39
exon number 2
gene id G61162
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 8218094 ~ 8238482 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

cacacacacacacacacacacacacacacacacacacacacacacacacacacgccctagGCAACATGTAGGACCGATTGacattaataatgtgtgtgtttgtaatcttttttttttattaattcttcTCTTAATAGCAGTGAATGTACATGTTTTCCCACTAAATTTACATGCTTATGTCTGAACATTGGCACGTCTGCGAGGCCTTTTTAATCACTAACAGGGCTCTCTGTCATATTTGACGGAGCACTTAGTCACTCTGAGTGTGGTGTCTTATGAAAAAAAGCTTCTCACTCGCTCTGTTCAGTGAGTCAAATTTTGCCAGGAGCTTAAAGGGGCAATTAGGTGAGTCATTAAAGCTACTTGGACATTTGTTGAGGTTCTCTGTGAGAGTCCAAGAGCACATACacgaaaaaaataagaaagaaagagagctcGATTTCTTGCGTATAGAGCGAGTCCGATGAGAAACGTGAGGGAATCCTTGCTGTCCCACCTGCCTGCTTCACTCTCTGCGACTTTGACAGCTGTCGCTCTCTGTTTTATGGGCTACATGTGGATGTAACAACAGTGTCAGTAGCGTCACATCAGTCAaaccctccctctctctctctccctctctctctctctctctctctctctctgaaaccATCCTGTTTAGTGCATGTCAGATTTTTCTACTTCTATAACCGTCGACTCGCCTGCACGCCAACCTTTTTGCACACGGAGAACGTCGAACTCTGGAACGTCTAATAGGAGCAAATAAGGTTGGGATTGAGCTTAAAACGTATTGATTTTTGGCCTAGTAGACACAACATGTAATGCAAGTCATCCTAGATCTCTGAAAGTCAGACGATAGAGCCTTTAAAACAGACCTCAGTAGACATTCTCGACACATTAGCATCATGattgcattaaaatgtgcaCTTGATTAACTGAATTCTGAATGTATTCGTGTTACCTGGTTTTCTCCACGTCTCGTGTCGTTCATCTTTGTACATCTTAAAGGTGCggtcaatgatttttttaagtcagaattattttttctaatatttgCCGAGGTTCTCGGACATGTAGGCAGGTTCAATAAGATAAAGACTCAGGAGAAAAACTCGGACTGTGTTTTAtgaaaatgggagaaaaaaatgcattgcgTGGACCACCTGCCTCCAACCAATCACAACAAAGAGGAATCTACTCATCTTGATCACAGTGGCTGTCAAGTCATTGTCAGCACAAGGTGTGTTTCTTGAGTACAATGAgcattattttcactttgttttgatttcaggTCATGTACTTCTGTTTGTTATGCGCTTTCATTTCcgttctagtcctgtctccgcAACTGTCTCTCCTGATTGAGTGCATGTGTTCTGTGTTAAGCTCTTAATTCATTTGTCTATGTACAGTTTACCCTGCTGTTTAGTAGTTTCGTCGCGAAGTCTTATCATGCACCTGTGTCGTTATGTTCTGAGCCTTGTTTTCCCGTGTTCCCTGTTCTTTGTTTTGTAGttgtacttcctggttttgactaCTGTCTGTTTCACCGATTTCTGCTTAATGGATTTTAATACTGTTTGCAAAGAAATCATTGAGATGTACTATTCAGTTATTTCAGGGACATGGCTTTGTTTTGATTTCAAAACATTTAGCTTCAACTTGCATCAGAATCgctgactgcacctttaagtgtTACAATAGGATACTAGGAGAATGGTGGCTGTTTTTAGACTAAACATTGTGAGTGCAAGGCCATTGTGGAAATATCGGATAAacaataaggggaaaaaaagaaaggaaaaaaaaacacatgtcaAAATCTCAGGGAAAATGTTGCATCATGGACCGAGACTGAGCAGCGAACACACGCATTTTGCTCAGGAAACAAGGAGTGTGTGGGCGGCCGTGTACGTTGTagtcagcagttttttttttttctcgcgTGGTTTTTTAGCTCCTCGGCGAGCTCATGCTGGGTGAGTGACTACTGCCATTAAAGCAGAGAGCTGGGAAATTGGCCACAGAAAATGTAACTGCAGCTCTCTGTTTATCACTGACATTTGAGGAGAGATTAAAACCTCATACACATATTACAGTGATGAATTTCCCAAGGACTCATCTCCATTTTAAAACCGTACCTCTTCATTTTTGCCGTCCATCGCCTCCTCAGAGCCTCGGTTACATAAGAGATGTGGTTAAGAGCGAGCCGCCAGGATGGTGTAAATGCGATGTGTCTTAGGGAAATAGCATGAAGGAATTTTCCTGGTATCGATTACCATGGAAACGCCTCGCAAAATTTGGTCTCCGTGTTTGGTTTCTCTTAAGGGAAATGTTCTGTGCTGCAAATAATGAGCAGCATTTTTGTGTCACAGTGTTGTGGCAGTTTGTGATGCTGTCACACGTTATACAGGCTGAAGTGAAGTGTCTGGAAGTAAGAAGTGCATTTTTGACTCCTGAAGACAGGGAATAAGAAGGAAACGGGGGAAAAAATCTTCATATGAGCTTGAGTGTATGGAGGAGTTCTTCAAGGTTGGAGTGTTTCTCACTCACttactcaagaaaaaaaaaaaacactactgcCTGGCAATTTGAATTTTCCACGACCTCAAAGACACCTTAGCATTCTGAAATACTCGCAGAGGAACAGCCTCAAAAAGCCGTCTCCAGCCGTCTCTATAGATCTCTGGGATGTCATGTGTTTGAAGAAATTGTGTAGTGGAGATACTAGCAGTTTTTAATGAATGTCAAATATTCACACgtaaacaaaaggaaaatgtaattcattaaattattgcaagccaacaaaagaaaatgctcatatattaaaaaaaaaaaaaaaaaccataacaTTATAAAGATAGGTGTCTCAGAAGTAGGTGTCGCAAAATTtcttaaaacaaattttaaacaaatctttaaataaactttcatacattaaatttaaatgttgcATGGCAACAAAGAAaaggttcatttatttattaaaaataaacattgtgaAGCTAGGTGTCTCTAAATTGTGTGTGATATGCAGTGCATCTAAGCAAAAGAGTTAAAACAGgacaaaataatgttaaaacaaACTTGTAAAGCTAGGTGGTTTTTTTGTAATATGCAGCATATCTAAGTGCAGGGTGTCAAACAATATAATGTTACATTAAATGAGGaaacactcatttatttataaaaagctCTGAGAAAAAActtactgttaaaaaaacattgtaaagTTAGGTGTTTAGAATTTTTTAGTAATATAAAGCGTATCTAAGTGTAGGACaatataatgttaatttaaatgtgaaaattttcatttatttataaaaacaaacttgTAAATC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU72311 lncRNA upstream 99243 8117708 ~ 8118851 (+) True G61098
TU72309 lncRNA upstream 107651 8109478 ~ 8110443 (+) True G61096
TU72112 lncRNA upstream 431459 7786214 ~ 7786635 (+) True G60931
TU72113 lncRNA upstream 431459 7786267 ~ 7786635 (+) False G60931
TU71962 lncRNA upstream 515996 7611023 ~ 7702098 (+) True G60804
TU72427 lncRNA downstream 53446 8291928 ~ 8326744 (+) True G61175
TU72429 lncRNA downstream 56889 8295371 ~ 8296101 (+) True G61176
TU72653 lncRNA downstream 486063 8724545 ~ 9037722 (+) False LOC113539869
TU72660 lncRNA downstream 505281 8743763 ~ 8824178 (+) True G61350
TU72650 lncRNA downstream 558990 8797472 ~ 8800324 (+) True G61347
XM_026913382.2 mRNA upstream 114077 8102405 ~ 8104017 (+) True znf830
XM_026913276.2 mRNA upstream 117029 8085148 ~ 8101065 (+) False LOC113526329
XM_034303539.1 mRNA downstream 226823 8465305 ~ 8504653 (+) True arhgef11
XM_026914284.2 mRNA downstream 270651 8509133 ~ 8524288 (+) True vangl2
XM_034304095.1 mRNA downstream 291706 8530188 ~ 8541291 (+) True si:cabz01074946.1
XM_034304096.1 mRNA downstream 291706 8530188 ~ 8541291 (+) False si:cabz01074946.1
XM_034303874.1 mRNA downstream 546463 8784945 ~ 9370485 (+) True LOC113539869
XR_003402765.2 other upstream 155255 8056056 ~ 8062839 (+) False LOC113526345
XR_004578001.1 other upstream 1621533 6595126 ~ 6596561 (+) False LOC117597080
trnar-ucu_1 other upstream 1787517 6430486 ~ 6430577 (+) True trnar-ucu_1
trnat-ugu_2 other upstream 2074457 6143565 ~ 6143637 (+) False trnat-ugu_2
trnat-ugu_1 other upstream 2078722 6139300 ~ 6139372 (+) True trnat-ugu_1
XR_004578049.1 other downstream 456870 8695352 ~ 8724440 (+) True LOC117597156
TU72678 other downstream 655988 8894470 ~ 8896729 (+) True G61359
XR_004578067.1 other downstream 1519978 9758460 ~ 9774049 (+) False rbm14b
XR_003403991.2 other downstream 1568839 9807321 ~ 9832280 (+) False gal3st3
XR_004578013.1 other downstream 1622412 9860894 ~ 9881226 (+) False si:ch211-168d1.3

Expression Profile