RNA id: TU72443


Basic Information

Item Value
RNA id TU72443
length 3987
lncRNA type inter_gene
GC content 0.38
exon number 2
gene id G61190
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 8239988 ~ 8245664 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GCTAACTAGAAAAGAGAACAGAACAGTATTAAATGAAAAGATGTCCATAGAGGATCATTTAAAAGAACTATCACTAACTCACACTGGCATTACACTCCATTTGCACTTTTATTCCAGTTTAAGTTAGTCTTTATTTCAAAAGAAAGagtaaatgaaaaagaagaagagtaTATTAGTTAACCACGGCGCTCATCTCCACTGGGAGAAAAGCAACACCAAGTGTGGAAGTATGAGAAGTCCATCTAAGCCAAGATCAATTAGGACCAATTCCAAAGTAATTAAAATGTCTGACTAAAGGTCTTTGAACTCGAGACACAGCATTGCGGAGTGAAATTAAACCGCACCACTATCTATGTTCCCACCTGCAAGCACTGATTCAAGGGCTTTTTCATGCTTACTAATGCAaagcaatgacatttttatgcGCTTGGCAATTATGTTCCATGCTGCTCTTTACCAACGCACACCACTGACTGTAGGCTGGGACACTTgacaaatatttaacaataaatcCCTTGGTAAACTGGAGAATGGCAATTCCCTCATGTGGAGAGTGCCATGAGTGCCGCTGGCACAGCAGTAAAGGTGCCACACTGAAGGGATGCGGGTGAAAATCACAGTTGTGCACCGAGGAATACTGAAAGCGTTCTTTCTCATTTGGGATTAGTCAAAAGAGCATAGAGCATCATGTTAATTTCTCTGAAAAGAAACCAGGAATTTTAGTCTAGAGCTGGCCTAATAGTTGATACACTCTAGGTCCATTGGGGAAACATGTGAGcatttgaattttgaaaaaaattgtactgtttttttctgaaatgaattTTCATATCATTACAGACTCTTAATTAAGCATTTCTAGTTAAGTCTGTTCACTCAGCCGCCATCTTGGCGACACTCCCAGGCACGTACTTTGAATTTCTCACGAGTTTAactttaatttgtaattaagtTCTTCAGAATACAAGCTTTACTCTTGTATCATAGCAGAGAAAAAGATCATTTTAGTATTTGATTTGTaggtcatttttaaattttctgcaTGCAACTTATTTTTAATCGCTGATTAGGCCATAGACATTGGCGCACATCTCTTACCGTTAGTTATTTCCAAATAGATCTGGCTAGCTAGATAAGTAACTACTCAAACTGTCTCTGCTCTTAATCTAACTTATTGTCTGATGCTGTTAATGACAgatttgtgggggaaaaaagcaagaagCAAAACATCAGTCTAACATCTTACTAAGAACTTTTTTCCCTTAGCTGAATTTCAAATGGCGTCTACTGGTAAAACAGAGCACTACATATGTGCTACTCTATGTACATtatgttataccctatgtagtgagcatatatagtgaataggatcTGACATAAcagtttgtcagaaaaaaacaatactgtGTGTAACATGGATTACGATTTCAAAAAGTATGATAAAATTCTGTAATTTGACTCTATGtcattttcttctcttcagatattcaaatgcatttgaatagTAAATCTACTTAAAATCTGCATAAGGAATTCTAGGCTCAGTTATTTAACATGAGTTTTAGAAAGGTATGCATAAAATATTTCTCAGCACGCGTCCCTTGCAATATATCTTTCCTCTTTAATGACATTACAGATTACAAATAATATCACAACTCACCCCTTTGCAAAGAAATGAATTTCAAAGCTGCAATTTCAGCTCCCGAGCATCGCACAGCTCCCCAAAAGCTCCATAATAAGGCCATAGAGCAGTGTGTTGACTCAGGACTAGGCCTGGATAAATGAAGTGCCAGAACGGTCCGACCTTGATTTACTCCTACAGCTTCTCCTGTCTCTTCCTTTCCCTTCATCTATAGCTGCTGTGGCCCTGAACAAAAACTCTTAACCCCACATTGCACCAACATGGCACCTCATCATAACGTCTTCTCTGCCCACCCTTACGTGTTCGACTAGAAGATGATGTAGCACTTTCTACTCCTtggttaaataaaagtaaaagaaaacgCATAATGCAAGGAAAATAAGAGACCGTGATGTTGCTTGGTCTGGCTTTGAGCTGATAAAGGAGCAGGAATTAAGTGTCGCCGTCGTGTAAACACCCAGCAGTAGCCGCTGctttaacacacattaataacatttcAAGCAGAAGCCATGTTGCTGTTTACCTTCCCGACTGAGCAGAATGTACTTCATCTAATTGGAGTCcattatttaaaggaaaaaaataataaaactctcCTTGCCGTTTATATGACTTTGGCTATTAGTGAAATAATGACTCGCTCCCTTGAGAATGTTTAAGACTTAGCCATGTGGAGATGCAAAGAGCATCTTGCAATTTCCATAATTAAAACCCACAGCAATCAGCAATCATAATCCCTCTTGCCAAACATCATTCAGGATAGAATTTTGCCCGGGCGATCAGCAGCAGGCTCTCTGGCACAGCCATTGTGCTCAGACAACAACGTTTCCCCCCATCACAGGCCCTTTAGAAACCGAGCCAATCAGCACCAATCAAGAGGAGAAAACGGGTGAATTAGCAAGTCTTGTTGAGGCATTCGCTTTCCTGCAACATAATATTTCAGCATGGTCTTTAGTGATTATCAGGCAAACCCTCAGAGGCAGAAACATGTAATGCAGCCCTGCATTTATTACCGGATCATATCAAAACACCCAAATGTGAGTGTCAACGAGGGCCTGATAgcatataaatattttcttggAATGGGaggcataataaaaaaaaaacatctacaaaaaaattattcatcacTGAAGGGAGGAAAAAACGTAAATATTCTTACACAATTTGAACATCTAATCAGCTGTTTCAGTTTGTAACTGTTAtacaaatattaacatattgGCAATGTTTCAGAAAATGTCATGATTGTTCGTTGGATTTGTATGAATTTCGCATGAGTTCGACTTTAATGCGTAATTGCAGTTGCTTCGTAATACAAGCTTTACTCTTTTATCACAGCAGGGAAAAGGATTGATTTAGCATTTGATTGTAGGTAACTCTTACATTTTCTGAATGCAACTTATTTTTAATCGCTGATTACGCCATAGACGTTGGCATACATCTCTTACCATTAGTTATTTCAAAACagatctggctagctagctaagtaacGCACTTCAGCGCAGAAAAACTAGCGATGAGCACGTAAAAGCAGCGCAAGCACTACATTTTGTTGTCTTGAATCTACTAATGAATTCCATGCCACTCTTTCAACTATCCTTCATTATCAGAAGAATTAATTCTCCACAAAGGGCCATGATTAGTCCATAGATTTCCATAGAAAGGCTCCATCGTATATATACAGGATCTTAATCCTACTCTCATGCAAGCtcttatttaaaatgatgattCATGAGGATGTAGTGGGACGTCAGGATCACGGAGATGAGCAGCGTTTGCCTGTGAGGGATTAGCCTCTCAGCCTGCTACACAGGGGCGTAATCAAACCGTAATGCTCTCCAGCCAGCCTTTAATGCTGTTTCACGGGCATCTTTACAGACAATGATCTACctataaaaaataatctaattaGTGTTCTAATTATTACCCTGGGTGGCATCTTTATGATATAAGGAAATGCAAATATGTGTTTCCTTAGAGTCAGCAAGTAGAAGATGTGCTCTTAATTATTTCCTTAATCCTCATTATCCGCTCTCTGCTTTACACTGGATGTTCTATCAAGTCAGATTAAAGAAATACAATTGTAAGAGGTATTTAAAAAGAGCTTATATGTGTTATCTTCTTCGTAATcagaaggaaaataaacagctttaatGGAAATAGACACCCAAAAGCAGTTGCTGTGTTTGGGGGATCTTCCTGAAGCAGGTGTGTGTACACAAGGTGGGAGTGAAAATAAGAGATGAATGAAGAGTGACAGCCACTGagatcacctttttttttttgtttcaggttAACAGAGACCGCTCATTTATTGTATACACTTCCTTCACACTTGCAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU72380 lncRNA downstream 133574 8105892 ~ 8106414 (-) True G61139
TU72403 lncRNA downstream 135763 8102444 ~ 8104225 (-) True G61154
TU72349 lncRNA downstream 223805 8015956 ~ 8016183 (-) True G61127
TU72009 lncRNA downstream 701170 7441262 ~ 7538818 (-) True G60846
TU72481 lncRNA upstream 101492 8347156 ~ 8353286 (-) True G61220
TU72551 lncRNA upstream 175276 8420940 ~ 8495027 (-) True G61275
TU72549 lncRNA upstream 207128 8452792 ~ 8551855 (-) False LOC113526822
TU72568 lncRNA upstream 234239 8479903 ~ 8550102 (-) True G61286
TU72589 lncRNA upstream 255992 8501656 ~ 8504594 (-) True G61301
XM_034303865.1 mRNA downstream 121102 8106893 ~ 8118886 (-) True efcab14
XM_026913409.2 mRNA downstream 161135 8065202 ~ 8078853 (-) True rpe65a
XM_034303614.1 mRNA downstream 321091 7811655 ~ 7918897 (-) True si:ch211-241e1.3
XM_026913631.2 mRNA downstream 512842 7696900 ~ 7727146 (-) True LOC113526521
XM_034303902.1 mRNA downstream 1121914 7095820 ~ 7118074 (-) True dsg2l
XM_026913530.2 mRNA upstream 201719 8447383 ~ 8450998 (-) False LOC113526472
XM_026913531.2 mRNA upstream 201719 8447383 ~ 8450914 (-) True LOC113526472
XM_026914208.2 mRNA upstream 206946 8452610 ~ 8462244 (-) True LOC113526822
XM_034303306.1 mRNA upstream 298612 8544276 ~ 8561032 (-) False LOC117596993
XM_034303305.1 mRNA upstream 298612 8544276 ~ 8561032 (-) False LOC117596993
TU71817 other downstream 1340761 6882469 ~ 6899227 (-) False LOC117597002
trnae-cuc_12 other downstream 1796173 6443744 ~ 6443815 (-) True trnae-cuc_12
trnak-cuu_3 other downstream 2059029 6180887 ~ 6180959 (-) True trnak-cuu_3
TU71184 other downstream 2280443 5900249 ~ 5959545 (-) False G60166
TU71182 other downstream 2309789 5900249 ~ 5930199 (-) True G60166
XR_004578041.1 other upstream 329842 8575506 ~ 8578850 (-) False LOC113526753
TU72820 other upstream 737570 8983234 ~ 8984453 (-) True G61478
XR_003403995.2 other upstream 1069185 9314849 ~ 9327431 (-) False LOC113540087
TU72884 other upstream 1092162 9337826 ~ 9338745 (-) True G61537
TU73323 other upstream 1280910 9526574 ~ 9528803 (-) False LOC113526752

Expression Profile