RNA id: XM_034303894.1


Basic Information

Item Value
RNA id XM_034303894.1
length 989
RNA type mRNA
GC content 0.47
exon number 6
gene id LOC113526753
representative False

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 8571496 ~ 8595625 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTCGAGCTGCAGGAGCACGAAACAGTCATTCACTAACGCAGCAATGCAGGACTCTCATGGATATCATATTGCCATCTCTGGTGTGCTGTTGTTTGAGATTCTTCAGGgtgtgtgtgttgttatggctgatcagaaGACAGTGATGTTGCTCAGAGCTACTGGGAGCTCCCTGGACTTTACGCCAGAATATCCAGATGGGACAGTGTTATTCGCTGAGTGGAAGTTCAATGGGAAAAAGTTTGCTGACTACGATTCACCCAATAATTACTCCTTTCCAGCATCCCAGTTCAGTGGAAGATTAAAAGGGAATCATGATAAAGTTGGAGTAACTGTACAAAAGCTTCAACCCCAAGACTCTGGGGTATTCTCAGTGGTTGCAGATGGAACTAGAGGACAGGCTccaacacagatatttaaagtttatattGAAGACCCTATAACAGCTGTGCAGATTGAGAAGTATCAGACGTGGAAAGTGGCCACAAACAGCTGTGATGTTGATGTGAAGTGTGCAGCGCTTGGAGCTGAGAGTGTCTCTTACCTGTGGAGCGGCTATAAGACTGCGAGTGGAGCTCAGCTTCAGTTCAGTCTCTCACCAGCAAAAGGAGCCGTTACACTGAACTGCACTGCAGCTAACAACGTCAGCTCCAGTTCTGCTGCAGAGACACTGAGCTGTAGCATTGAACAGCCTGAACCAGCTCCATTGTCAGTGCTCAAACTGGTCAGTAGTCTAGTGGCGGCCTCTCCGTATCTGCTGGTGACCATCATTCTGGGTGTAAAATGTTACAGAGCTCGgggtcATCATAACAGCCAGTATGCTGTAACGgtgtgtgtgttggtttggcTGACACAGTGAAGGTGCTCAAAGTTGGGAGCTCCTTGGATCTTCCATTTCAATACCCAATAGAATCAGTGTTATTGGTTCAGTGGACCTTCAATAAGAACATTTTTGCCGAATACAGTACAGACCAAAATTACACACTCCTGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU72549 lncRNA downstream 20404 8452792 ~ 8551855 (-) False LOC113526822
TU72568 lncRNA downstream 22157 8479903 ~ 8550102 (-) True G61286
TU72604 lncRNA downstream 46759 8522890 ~ 8525500 (-) False G61310
TU72606 lncRNA downstream 46759 8522890 ~ 8525500 (-) True G61310
TU72589 lncRNA downstream 67665 8501656 ~ 8504594 (-) True G61301
TU72583 lncRNA upstream 9241 8588091 ~ 8591956 (-) False LOC113526753
TU72768 lncRNA upstream 93760 8672610 ~ 8679000 (-) False LOC113526752
TU72775 lncRNA upstream 149504 8728354 ~ 8738480 (-) True G61445
TU72792 lncRNA upstream 268734 8847584 ~ 8933417 (-) False LOC113526752
TU72796 lncRNA upstream 277453 8856303 ~ 8861746 (-) False LOC113526752
XM_026914282.2 mRNA downstream 4271 8564114 ~ 8567988 (-) True LOC113526862
XM_034303306.1 mRNA downstream 11227 8544276 ~ 8561032 (-) False LOC117596993
XM_034303305.1 mRNA downstream 11227 8544276 ~ 8561032 (-) False LOC117596993
XM_034303304.1 mRNA downstream 11227 8544276 ~ 8561032 (-) True LOC117596993
XM_026914208.2 mRNA downstream 110015 8452610 ~ 8462244 (-) True LOC113526822
XM_034303873.1 mRNA upstream 60618 8639468 ~ 9528825 (-) True LOC113526752
XM_034303885.1 mRNA upstream 338524 8917374 ~ 8924937 (-) False LOC113524717
XM_034303886.1 mRNA upstream 338524 8917374 ~ 8924937 (-) True LOC113524717
XM_026936304.2 mRNA upstream 735999 9314849 ~ 9327431 (-) True LOC113540087
XM_026936305.2 mRNA upstream 735999 9314849 ~ 9327324 (-) False LOC113540087
TU71817 other downstream 1673032 6882469 ~ 6899227 (-) False LOC117597002
trnae-cuc_12 other downstream 2128444 6443744 ~ 6443815 (-) True trnae-cuc_12
trnak-cuu_3 other downstream 2391300 6180887 ~ 6180959 (-) True trnak-cuu_3
TU71184 other downstream 2612714 5900249 ~ 5959545 (-) False G60166
TU71182 other downstream 2642060 5900249 ~ 5930199 (-) True G60166
TU72820 other upstream 404384 8983234 ~ 8984453 (-) True G61478
XR_003403995.2 other upstream 735999 9314849 ~ 9327431 (-) False LOC113540087
TU72884 other upstream 758976 9337826 ~ 9338745 (-) True G61537
TU73323 other upstream 947724 9526574 ~ 9528803 (-) False LOC113526752
TU73432 other upstream 1197428 9776278 ~ 9805318 (-) True G61972

Expression Profile