RNA id: XM_034303896.1


Basic Information

Item Value
RNA id XM_034303896.1
length 1923
RNA type mRNA
GC content 0.40
exon number 3
gene id LOC113526753
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 8571496 ~ 8595625 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AACCACTTACACAGGGAGCTGAAAGCCACACACTCCAtacaaactgatttaaaaaaaaaaaaaaaaaagtgtgtaattgttgatgtggtgggtgaagttttctgtaaggggctgtttatttagcattttttgaaagttttttattttttaaacattttttaaatgtcagtatGAAGATATACAGTGTAGTGTCTGATCATGAACAGCAACAGTGCACATAGTAGAGGACCACACCTGGGCTCTTAACACAGTCTGCTTACCCAAAAAAATCCCAGCAGTGTCTCCATGTCCTGCAGAGACTATAATGGGAGCAAACCTCCAACAAACTTCTCTGTATTCTACCAGGGAGGCTATAGTGAGCATTCTGTATCACCCCACACTAGTGTTGCAGCAGTAACATCTTGTAACACAAGACCCTTCAATAGGTAGGAAAACAGCTGAGAATATGGATGTGATGTTTAAATATTATGTGCTGCTGCTTATTATGACACTTTACACTGCAAATCACACTGTTTgaaaaattataacaaattaTAAGTTTGCCCACTGCATatctttttttacatcacctACCAGGGATGCAACACGATacttgtatgtgtatttgtatatgtttagTGTTCCAAATATCCataatctgtatctgtattcagatatAAACTGGAAGTTATCATGGTCTAAACCAAAGCTGTAACTGCAGCAAAAGGTGATTCTACCAAGTACTAATCTGAAgaggttgaatacttatgcatgcagcatttctaatttttttttttttaaatttaaagatctgctgataaataatacattttggcTTTGAGATTTTACATTAAGATCATAATGGTTTGCAATATAAATACTGGCCAGagcattctgtgtaaatgtcaatgtttttttgGGGGTCAGTGCACGTTTAACCGTTTTATTAGCTGTGCGTGTTCAGTGACGCAGTTCATGAGAAGTGAGAAAACCTCTAAACCACTTTCTGAGAATACACTACCCATGACAACTTTGTATACAGCACTGTTTGGTACATTTTTTCTTGCGTTTAGAGCCACCCACAGTGAACATTTATAGATTGAGTATCCTCAGGAAGTGTTTTTGCTGTCTTCAGCTAGGGTTGGGTCAACAGACTCAGTCGACCTGCAGCAGGGCAAAAGAGTAGTAAGGTAACACAGCAATGCAGGACTTTCATGGATATTGTATTTCCTTCTCTGGAGTGCTGCTGTTTGGTTTTCTTCAAGgtgtgtgtgttggtttggcTGACACAGTGAAGGTGCTCAAAGTTGGGAGCTCCTTGGATCTTCCATTTCAATACCCAATAGAATCAGTGTTATTGGTTCAGTGGACCTTCAATAAGAACATTTTTGCCGAATACAGTACAGACCAAAATTACACACTCCTGGAATCCCAGTTCAGTGGAAGATTAAAGGAGCACTATGATAGAGTTGGAGTAACTGTACAAGATCTTCAACACCAAGATTCTGGGACGTTCTCAGTGGCTGCAGTTAGCATTAAATCACAGTatcaaacacaaatatttaaagtTTATGTTCAAAGTCCCATAACAGCTGTGCAGATTGAGAAGTATCAGACGTGGAGAGTGTCCACAAACAGCTGTGATGTTGATGTGAAGTGTGCAGCGCTTGGATCTGAGAGTGTCTCTTACCTGTGGAGCGGCTATAAGACTGCGCACGGAGCTCAGCTTCAGTTCAGTCTCTCACCAGCAGAAGGAGCCGTTACACTGAACTGCACTGCAGCTAACAACGTCAGCTCCAGTTCTGCTGCAGAGACACTGAGCTGTAGCCCTGAACAGCCTGAACCAGGTACAATTACACTTTTCCTACTGGTGAGTGAACACCATAGTCTCAAACTAAACTTTAACCACACATGGTTTACAAAAATCTCTATACACTGaatcac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU72549 lncRNA downstream 19641 8452792 ~ 8551855 (-) False LOC113526822
TU72568 lncRNA downstream 21394 8479903 ~ 8550102 (-) True G61286
TU72604 lncRNA downstream 45996 8522890 ~ 8525500 (-) False G61310
TU72606 lncRNA downstream 45996 8522890 ~ 8525500 (-) True G61310
TU72589 lncRNA downstream 66902 8501656 ~ 8504594 (-) True G61301
TU72583 lncRNA upstream 12597 8588091 ~ 8591956 (-) False LOC113526753
TU72768 lncRNA upstream 97116 8672610 ~ 8679000 (-) False LOC113526752
TU72775 lncRNA upstream 152860 8728354 ~ 8738480 (-) True G61445
TU72792 lncRNA upstream 272090 8847584 ~ 8933417 (-) False LOC113526752
TU72796 lncRNA upstream 280809 8856303 ~ 8861746 (-) False LOC113526752
XM_026914282.2 mRNA downstream 3508 8564114 ~ 8567988 (-) True LOC113526862
XM_034303306.1 mRNA downstream 10464 8544276 ~ 8561032 (-) False LOC117596993
XM_034303305.1 mRNA downstream 10464 8544276 ~ 8561032 (-) False LOC117596993
XM_034303304.1 mRNA downstream 10464 8544276 ~ 8561032 (-) True LOC117596993
XM_026914208.2 mRNA downstream 109252 8452610 ~ 8462244 (-) True LOC113526822
XM_034303898.1 mRNA upstream 1118 8576612 ~ 8578850 (-) False LOC113526753
XM_034303873.1 mRNA upstream 63974 8639468 ~ 9528825 (-) True LOC113526752
XM_034303885.1 mRNA upstream 341880 8917374 ~ 8924937 (-) False LOC113524717
XM_034303886.1 mRNA upstream 341880 8917374 ~ 8924937 (-) True LOC113524717
XM_026936304.2 mRNA upstream 739355 9314849 ~ 9327431 (-) True LOC113540087
TU71817 other downstream 1672269 6882469 ~ 6899227 (-) False LOC117597002
trnae-cuc_12 other downstream 2127681 6443744 ~ 6443815 (-) True trnae-cuc_12
trnak-cuu_3 other downstream 2390537 6180887 ~ 6180959 (-) True trnak-cuu_3
TU71184 other downstream 2611951 5900249 ~ 5959545 (-) False G60166
TU71182 other downstream 2641297 5900249 ~ 5930199 (-) True G60166
XR_004578041.1 other upstream 12 8575506 ~ 8578850 (-) False LOC113526753
TU72820 other upstream 407740 8983234 ~ 8984453 (-) True G61478
XR_003403995.2 other upstream 739355 9314849 ~ 9327431 (-) False LOC113540087
TU72884 other upstream 762332 9337826 ~ 9338745 (-) True G61537
TU73323 other upstream 951080 9526574 ~ 9528803 (-) False LOC113526752

Expression Profile