RNA id: TU72604


Basic Information

Item Value
RNA id TU72604
length 2579
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id G61310
representative False

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 8522890 ~ 8525500 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ttcactttaaaaaagaaCAAGGTGAGGGGTACAAATGTTACAAAACTTCATTACCTATGTGCATGCATTAGGCCTAAAGAAGAACTCTGaggttcatttaaaaacaacctaCACGAAATAAAACTTTCAGTCTTCCATAGCATTGaagaaggaaaaattagattttatgtacaaaaggggaaaaagtttAGAGctgccaaaaaacaaaaagtgtaaCGTGTGCTGAAGGCTGTGGGCCTCGCTATGTGAGACttgtaaaacattttgtctGAATTATAAGGCAAACGATTGGTGAACTTTGTGCTCCACCagtatgtgtgtgaaggtgcACTCCCTCACATACTACTACACTAtcatcactacacactacatcaATTATACATGAATATGAGGTGAATATGAAAGTTCTTTCATACGGAAAGAATGACATGCTTTGACACACATTGAACTGTAAGCCAGGTTTATGTTGTAGTTTTGCAACATTTTTCCACTGTGTGTAAAAGCCAGACGATCACAACATTGTGACACCTAAAATTACACGAAACACTTCCTTCCTTATTCTGAAGGAATCGTTACCTTACTGGTACATGAACcacatttttgtaaacaaatgaacatttaaaagGCCCCTTGATcatttttagaataaaaaaaaaaaaaaaaaaaaccatatacAACAAAAATAGTTCACCCTAAAACTAACGATCATTATGAACGAAAGCTGACGCAGTCCTGTTAGCATGATCTCGCTTGCATAATGCTAACAGAGTAGCAGCGTTAGCATTTTGGAGGTGAACTATTGAACATTCACGAAAGGAAAGATGCTTTTCATGAGCCCTTGCGATCTGGGGTCCTATTTACACACATTGATGAAATATGGAGTGTTTCCAGCTCAAAAAAGTAAACATGTAGTAAACACATTGCTTGTAAAGATGAATGTGTAGAGAAGTATGATGTTGTAAAGCACAGTAGAGAGATTTTTAATTACAGTAGTGTAACAAGGCTATGATTTCCAGTATTGAGGTCTATGAAGCAGCTGTCAGCTGatgctaattaattaatgtttcacGTTCCTGGCCAACATGGTGCCTTGATAGTGTTTCCTGAATTACTTGATTactttagcaggagaaagtgttCACAATTGGAtaagtgtttttgtatttggcTTTggttcagctttttttttttttcccccactctaTGATCACTACACTGCTGATACGCTGTGAGATGAAAACGGAGTCATAACATCCTAAAATGCTAGTTCACTCGTTTCTGATAAATGACTACTCTaatggcgttttttttttttttaaacatgcagtGTTGAGTCTATTTGAATAGAACCCTGGTACGTTTTCCTCCTCGCTGCAGTTCTTTGAGCAGGAAGGAACACACCTCACACATCTCAACCGTTTGGTCTGCTTCCAAATTAACTCTTAGATTGACTGCAGTAGGAAAGTGACTCAACTCTGAACTGAATCAACCTGCtagaagtgaatcaaacagCAGGAGTTATTTTCTAGATATTAGCTGTTTAACTGAGCTAAAGCACACAGCTGTAGTACTGCAGAAACgtgatgtgttctggatatttttaccaacaaaaaaaattaagaactCTGTATGcaatatgcaattttttttaattaattatttatacaattatgtaatttatttagcGCCAGCTCAGTGTTCTCCGTGCTCAGTTTCGTTAGttctgatgaataaaaaaagttatgaaGATGTTTTTAGTTCTAAATACCCTAAACATTATttgatttttggtttgtttaattatatgtagtgtgaaaccaaaccaaaccaatcCTCTAGCTATAAGCTGATGGATGCTTCATACCTCACTTGTTTGACCTGATAGTGTTCACATACTTCTTTATGAGAACAGAAGAACAAAACTGCATTAGGTTTTGACACATGACTTTGCCTGATCAGCTTGTGGTTAACAAGAACTTCTGACAGTTTCTCGTGAGGTCTCAAAGAGCGGCACGAACATCTTTACTAAGCTCCTTCTCCTAAAGGGCCTCAGCTCTGCACAGTGACACGTTGTGGGGTTGTAGAGAGAGGAATGCCAAGTCTTTAAGTTTGAAATGCGTAAGAACTGTTCAGTCCAAACCATctacatatatattaaaaaaaagaagggaaaaaaaaccaaaaaaaaactgacaaatgAAAAAGGCTCAGCGAcataaaaatagttaaaaagaaGTGGTTCTCTCCCTCTCAATCACCAAGCCTCTTCCTCTTCCCCCATTCTCTTCTCTGTACCGCTTTCTACACTGACGTCTCAGACTGCAGCCTCATCACGAACTTGTGGCTCTTGGGGTCAATGAATTCTTCTCCCAGTGTAAGGAAGGGAAGTGCAGTCACTGTGACAACGAGGGAGAATTCTAGGCGTCGAAGCGAGAACACGAGGCCCTGACGCAGTGATGATGTCACGGGCTCTTCGCTGACGAGAGTCCACTGGCGCCCCCTGCCATTCTCCCGCTGGTACTGCATGGTAGGACCCGCCGTCAGGTAACGCTCCAAAAACGCCTGAAGCACAGCAAGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU72589 lncRNA downstream 18296 8501656 ~ 8504594 (-) True G61301
TU72551 lncRNA downstream 27863 8420940 ~ 8495027 (-) True G61275
TU72481 lncRNA downstream 169604 8347156 ~ 8353286 (-) True G61220
TU72443 lncRNA downstream 277226 8239988 ~ 8245664 (-) True G61190
TU72380 lncRNA downstream 416476 8105892 ~ 8106414 (-) True G61139
TU72583 lncRNA upstream 62591 8588091 ~ 8591956 (-) False LOC113526753
TU72768 lncRNA upstream 147110 8672610 ~ 8679000 (-) False LOC113526752
TU72775 lncRNA upstream 202854 8728354 ~ 8738480 (-) True G61445
TU72792 lncRNA upstream 322084 8847584 ~ 8933417 (-) False LOC113526752
TU72796 lncRNA upstream 330803 8856303 ~ 8861746 (-) False LOC113526752
XM_026914208.2 mRNA downstream 60646 8452610 ~ 8462244 (-) True LOC113526822
XM_026913530.2 mRNA downstream 71892 8447383 ~ 8450998 (-) False LOC113526472
XM_026913531.2 mRNA downstream 71976 8447383 ~ 8450914 (-) True LOC113526472
XM_034303865.1 mRNA downstream 404004 8106893 ~ 8118886 (-) True efcab14
XM_026913409.2 mRNA downstream 444037 8065202 ~ 8078853 (-) True rpe65a
XM_034303306.1 mRNA upstream 18776 8544276 ~ 8561032 (-) False LOC117596993
XM_034303305.1 mRNA upstream 18776 8544276 ~ 8561032 (-) False LOC117596993
XM_034303304.1 mRNA upstream 18776 8544276 ~ 8561032 (-) True LOC117596993
XM_026914282.2 mRNA upstream 38614 8564114 ~ 8567988 (-) True LOC113526862
XM_034303896.1 mRNA upstream 45996 8571496 ~ 8575494 (-) True LOC113526753
TU71817 other downstream 1623663 6882469 ~ 6899227 (-) False LOC117597002
trnae-cuc_12 other downstream 2079075 6443744 ~ 6443815 (-) True trnae-cuc_12
trnak-cuu_3 other downstream 2341931 6180887 ~ 6180959 (-) True trnak-cuu_3
TU71184 other downstream 2563345 5900249 ~ 5959545 (-) False G60166
TU71182 other downstream 2592691 5900249 ~ 5930199 (-) True G60166
XR_004578041.1 other upstream 50006 8575506 ~ 8578850 (-) False LOC113526753
TU72820 other upstream 457734 8983234 ~ 8984453 (-) True G61478
XR_003403995.2 other upstream 789349 9314849 ~ 9327431 (-) False LOC113540087
TU72884 other upstream 812326 9337826 ~ 9338745 (-) True G61537
TU73323 other upstream 1001074 9526574 ~ 9528803 (-) False LOC113526752

Expression Profile