Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU72737 |
| length | 240 |
| lncRNA type | sense_over |
| GC content | 0.46 |
| exon number | 2 |
| gene id | LOC113539869 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_047598.1 |
| NCBI id | CM018544.1 |
| chromosome length | 33267568 |
| location | 8724545 ~ 9370485 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| XR_004578047.1 | lncRNA | upstream | 72458 | 9167556 ~ 9169479 (+) | True | LOC117597154 |
| TU72700 | lncRNA | upstream | 191413 | 8999522 ~ 9050524 (+) | True | G61377 |
| XR_004578044.1 | lncRNA | upstream | 326096 | 8910787 ~ 8915841 (+) | True | LOC113524706 |
| TU72681 | lncRNA | upstream | 326953 | 8910660 ~ 8914984 (+) | False | LOC113524706 |
| TU72864 | lncRNA | downstream | 71704 | 9314859 ~ 9317134 (+) | True | G61519 |
| TU72865 | lncRNA | downstream | 77006 | 9320161 ~ 9322444 (+) | True | G61520 |
| XR_003404092.2 | lncRNA | downstream | 90188 | 9333343 ~ 9333549 (+) | True | LOC113540718 |
| TU72881 | lncRNA | downstream | 91584 | 9334739 ~ 9335250 (+) | True | G61534 |
| TU72883 | lncRNA | downstream | 94721 | 9337876 ~ 9338742 (+) | True | G61536 |
| XM_034303887.1 | mRNA | upstream | 250485 | 8987729 ~ 8991452 (+) | True | LOC117597148 |
| XM_034303888.1 | mRNA | upstream | 250485 | 8987729 ~ 8991452 (+) | False | LOC117597148 |
| XM_034303891.1 | mRNA | upstream | 250485 | 8987729 ~ 8991452 (+) | False | LOC117597148 |
| XM_034303890.1 | mRNA | upstream | 250485 | 8987729 ~ 8991452 (+) | False | LOC117597148 |
| XM_034303899.1 | mRNA | upstream | 405366 | 8834823 ~ 8836571 (+) | True | LOC117597150 |
| XM_026936309.2 | mRNA | downstream | 86180 | 9329335 ~ 9332782 (+) | True | LOC113540089 |
| XM_026937204.2 | mRNA | downstream | 185570 | 9428725 ~ 9434604 (+) | True | pnp5a |
| XM_026937201.2 | mRNA | downstream | 384593 | 9627748 ~ 9641910 (+) | False | sf3b2 |
| XM_026937200.2 | mRNA | downstream | 384594 | 9627749 ~ 9641910 (+) | True | sf3b2 |
| XM_034303599.1 | mRNA | downstream | 406149 | 9649304 ~ 9707936 (+) | True | LOC113539871 |
| TU72678 | other | upstream | 345208 | 8894470 ~ 8896729 (+) | True | G61359 |
| XR_004578049.1 | other | upstream | 517497 | 8695352 ~ 8724440 (+) | True | LOC117597156 |
| XR_003402765.2 | other | upstream | 1179098 | 8056056 ~ 8062839 (+) | False | LOC113526345 |
| XR_004578001.1 | other | upstream | 2645376 | 6595126 ~ 6596561 (+) | False | LOC117597080 |
| trnar-ucu_1 | other | upstream | 2811360 | 6430486 ~ 6430577 (+) | True | trnar-ucu_1 |
| XR_004578067.1 | other | downstream | 515305 | 9758460 ~ 9774049 (+) | False | rbm14b |
| XR_003403991.2 | other | downstream | 564166 | 9807321 ~ 9832280 (+) | False | gal3st3 |
| XR_004578013.1 | other | downstream | 617739 | 9860894 ~ 9881226 (+) | False | si:ch211-168d1.3 |
| XR_004578014.1 | other | downstream | 617739 | 9860894 ~ 9881226 (+) | False | si:ch211-168d1.3 |
| trnas-gcu | other | downstream | 669242 | 9912397 ~ 9912478 (+) | True | trnas-gcu |
