RNA id: TU72660


Basic Information

Item Value
RNA id TU72660
length 745
lncRNA type sense_over
GC content 0.46
exon number 4
gene id G61350
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 8743763 ~ 8824178 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CCTGAACTCACATCAGACCTTAAAGGAGCTGCACTGACAGGAAACTCAGTGACTCTGTCCTGTACACTGAAGCTGCAGTCTGCTGGATGGAAGTTTTACTGGATcaaagacacacagagcactgagactgagactgaaacacactccTACTTCATCAGCTCAGTTAGAGTCTCTGATGGAGGTCAGTACAAGTGCAGAGCTGGAAGAGGAAACCCagtctactacacacactacagtgatgCACTCTGGGTAAACGTTACTGGTGGATCTCCTCCAGTGTCTCTGATCATCAGTCccagcagaactcaacactttactgctgactctctctcactgagctgtGAGGACCAGAGTGACTCTACTGGATGGACAGTGAgaggatacacacacagtgagacactGTTCGATTGTTCATCAGTTTCAGGATCTACATGTAACATCAGCTCCctctctacatcacacactggaGTTTACTGGTGTCAGTCTGAATCTGGAGGACGCAGTAATTCTGTCAACATCACAGTGCACAATGGTGATTTGATCCTGGAGAGTCCTGTCCATCCTGTAACTGAGGGAAATCCTCTGACTTTACGCTGTTTAAATCGCTCAAAGATTTTAGATTCTGGTGCTGATTTCTATAAAAATGATTCCATCCTCCAGTCCCAGACTAAAGGAGAGATGACCATCAGTAGTGTATCAGAGTCAGATGAaggtttctaccactgtaaacacccagagagaggag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU72427 lncRNA upstream 417019 8291928 ~ 8326744 (+) True G61175
TU72429 lncRNA upstream 447662 8295371 ~ 8296101 (+) True G61176
TU72411 lncRNA upstream 505281 8218094 ~ 8238482 (+) True G61162
TU72311 lncRNA upstream 624912 8117708 ~ 8118851 (+) True G61098
TU72309 lncRNA upstream 633320 8109478 ~ 8110443 (+) True G61096
XR_004578046.1 lncRNA downstream 9035 8833213 ~ 8834025 (+) True LOC117597153
TU72680 lncRNA downstream 86482 8910660 ~ 8914984 (+) False LOC113524706
TU72681 lncRNA downstream 86482 8910660 ~ 8914984 (+) False LOC113524706
TU72682 lncRNA downstream 86482 8910660 ~ 8914984 (+) False LOC113524706
XR_004578043.1 lncRNA downstream 86499 8910677 ~ 8912015 (+) False LOC113524706
XM_034304095.1 mRNA upstream 202472 8530188 ~ 8541291 (+) True si:cabz01074946.1
XM_034304096.1 mRNA upstream 202472 8530188 ~ 8541291 (+) False si:cabz01074946.1
XM_026914284.2 mRNA upstream 219475 8509133 ~ 8524288 (+) True vangl2
XM_034303539.1 mRNA upstream 239110 8465305 ~ 8504653 (+) True arhgef11
XM_026913781.2 mRNA upstream 387233 8231180 ~ 8356530 (+) True LOC113526595
XM_034303899.1 mRNA downstream 10645 8834823 ~ 8836571 (+) True LOC117597150
XM_034303887.1 mRNA downstream 163551 8987729 ~ 8991452 (+) True LOC117597148
XM_034303888.1 mRNA downstream 163551 8987729 ~ 8991452 (+) False LOC117597148
XM_034303891.1 mRNA downstream 163551 8987729 ~ 8991452 (+) False LOC117597148
XM_034303890.1 mRNA downstream 163551 8987729 ~ 8991452 (+) False LOC117597148
XR_004578049.1 other upstream 19323 8695352 ~ 8724440 (+) True LOC117597156
XR_003402765.2 other upstream 680924 8056056 ~ 8062839 (+) False LOC113526345
XR_004578001.1 other upstream 2147202 6595126 ~ 6596561 (+) False LOC117597080
trnar-ucu_1 other upstream 2313186 6430486 ~ 6430577 (+) True trnar-ucu_1
trnat-ugu_2 other upstream 2600126 6143565 ~ 6143637 (+) False trnat-ugu_2
TU72678 other downstream 70292 8894470 ~ 8896729 (+) True G61359
XR_004578067.1 other downstream 934282 9758460 ~ 9774049 (+) False rbm14b
XR_003403991.2 other downstream 983143 9807321 ~ 9832280 (+) False gal3st3
XR_004578013.1 other downstream 1036716 9860894 ~ 9881226 (+) False si:ch211-168d1.3
XR_004578014.1 other downstream 1036716 9860894 ~ 9881226 (+) False si:ch211-168d1.3

Expression Profile