RNA id: XR_004578044.1


Basic Information

Item Value
RNA id XR_004578044.1
length 1642
lncRNA type intronic
GC content 0.40
exon number 3
gene id LOC113524706
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 8910660 ~ 8915841 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTCTTAGCATGTAGCATCTCGCTAACCTTTTAATTACTGTTCGTGGGGCATTAACGATTCGTTTGTTGCATCCTAGCTTGTCGTTTCATCTGTGTGCGTGTCTCCTTCTGTTGCTTCAGTAGTAGAGTTGATGACTGCCCTCCTTTCAGgAGCTGGGGTCCCATGGGTGAAGGATCTTTGGTGGTGGTGCTGCTTCAACGTTTGCCGTTGGACACTTTTTgaagtgtttgggGTGGAGGATCGTCCGTTTGATTATCGGAGCTGGCGTACAGACTACGCGGTCGCTCCCTATGAGTCCTGTCTTCCTCGTAGTTGAGCTGAGTTTCTTCTttgggttttctttttcttccttttttttgaatttttgtatgttgtttgtgctgtattgtggttattttttttgtacccattattattgttttttgatGGAACTGTGACTCCATTTGATTTTCATTTACTTCTGTTTATAAGAattatctattttgtttttgattttctttcaggAGCTGGGGTCCCATGGGTGAAGGATCTTTGGTGGTGGTGCTGCTTCAACGTTTGCCGTTGGACACTTTTTgaagtgtttgggtgtgtgatcTGAGTGCACGGTggggtgtgtggaagtgtgctTTTGGATAATTATTGCTGCTGATCACTCCTGTGTGTAACCTCAGCCCCGTGGGatagtgtatttttgtttattgaactgctattggagagagagagctgccaGGAGTGGCATGTTACCATTGAGgctattttaagtatttttctACCTTGTTGAATTCATTGTGAATaaactttgtatttttatacgATACCTACGTTTCTTGCCTACCCTTTTATAAGAGAAGTGAACCTGTGTgacctaataataaactttggggtttatttctatttcctgGGTGAAAATCCCCCAGGTGGCGTAGTCGAATTTTCTACAAGTAGATGAACTTGGGCTTGTGTGTTAAAACCTGTACGGCACCCTCGCCACACATGCATGTTCCCACTACTGCTGGTTTCTGTGGCATGTGCCATGGTTTTCAGCACAAACACTATCAGCACTCAATGAGATGAGCTAATAATGAAAGATGAACATAATGTTAGATGTCACTGCAGCCTCTACAGCATCGTATCTTAACTTACGACACATTATTTTGCGCCACAAAAAATCTAAACACAGAGAGCTCAGAATGGAAATAGCTTGAAATGTGTCCATACCATCCACAGGCAGTGAGTAGAATTAATCAGAAACTGAAGCCTAATAACATAAAAGCTTTAAGTACAGTGCTGTGTTCACCTAAACTGGATATTTTACTTGCGAGTCTACTGAAAATTGTTAACAGTTATCAAGACACAAATCAGAGGAAGAGTCCTGAGACTCAGTGGAGGTTCGGTGATATGATTTAGCCCatgatttgtttgtctttttatacCCTGATGATTCTCACCTTGCTTGAAATCTTGTTGAGTTTATTAGTGCAGTAGTGAGTCTTAATCCCATGTTCCTgtgtaaatctgttttttggATTATGGATCTGCTTACTTTAATGTTGCCTTCCTTTACTTTGGAAGTGAAGGACCTCTGCTTGTAATTATGATGAAGTTTATTGGTTTGCACTTAATAAAGATCACACTGAGTTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004578046.1 lncRNA upstream 76762 8833213 ~ 8834025 (+) True LOC117597153
TU72660 lncRNA upstream 86609 8743763 ~ 8824178 (+) True G61350
TU72656 lncRNA upstream 96860 8812930 ~ 8813927 (+) False LOC113539869
XR_004578048.1 lncRNA upstream 104706 8804314 ~ 8806081 (+) True LOC117597155
TU72650 lncRNA upstream 110463 8797472 ~ 8800324 (+) True G61347
TU72700 lncRNA downstream 83681 8999522 ~ 9050524 (+) True G61377
XR_004578047.1 lncRNA downstream 251715 9167556 ~ 9169479 (+) True LOC117597154
TU72737 lncRNA downstream 326096 9241937 ~ 9243155 (+) False LOC113539869
TU72864 lncRNA downstream 399018 9314859 ~ 9317134 (+) True G61519
TU72865 lncRNA downstream 404320 9320161 ~ 9322444 (+) True G61520
XM_034303899.1 mRNA upstream 74216 8834823 ~ 8836571 (+) True LOC117597150
XM_034304095.1 mRNA upstream 369496 8530188 ~ 8541291 (+) True si:cabz01074946.1
XM_034304096.1 mRNA upstream 369496 8530188 ~ 8541291 (+) False si:cabz01074946.1
XM_026914284.2 mRNA upstream 386499 8509133 ~ 8524288 (+) True vangl2
XM_034303539.1 mRNA upstream 406134 8465305 ~ 8504653 (+) True arhgef11
XM_034303887.1 mRNA downstream 71888 8987729 ~ 8991452 (+) True LOC117597148
XM_034303888.1 mRNA downstream 71888 8987729 ~ 8991452 (+) False LOC117597148
XM_034303891.1 mRNA downstream 71888 8987729 ~ 8991452 (+) False LOC117597148
XM_034303890.1 mRNA downstream 71888 8987729 ~ 8991452 (+) False LOC117597148
XM_026936309.2 mRNA downstream 413494 9329335 ~ 9332782 (+) True LOC113540089
TU72678 other upstream 14058 8894470 ~ 8896729 (+) True G61359
XR_004578049.1 other upstream 186347 8695352 ~ 8724440 (+) True LOC117597156
XR_003402765.2 other upstream 847948 8056056 ~ 8062839 (+) False LOC113526345
XR_004578001.1 other upstream 2314226 6595126 ~ 6596561 (+) False LOC117597080
trnar-ucu_1 other upstream 2480210 6430486 ~ 6430577 (+) True trnar-ucu_1
XR_004578067.1 other downstream 842619 9758460 ~ 9774049 (+) False rbm14b
XR_003403991.2 other downstream 891480 9807321 ~ 9832280 (+) False gal3st3
XR_004578013.1 other downstream 945053 9860894 ~ 9881226 (+) False si:ch211-168d1.3
XR_004578014.1 other downstream 945053 9860894 ~ 9881226 (+) False si:ch211-168d1.3
trnas-gcu other downstream 996556 9912397 ~ 9912478 (+) True trnas-gcu

Expression Profile