RNA id: TU72795


Basic Information

Item Value
RNA id TU72795
length 503
lncRNA type sense_over
GC content 0.45
exon number 3
gene id LOC113526752
representative False

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 8639468 ~ 9528825 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ACAATCCCTAATGTTAAAGCCTCTGATAAAGGTGATTATACATGTAAAGGAACAAAGTCATCAGacccaaaatacacacagaccagtgatgctgttacactgactgtatcagAAAAACCTAAACCTGAACTCACATCAGACCTTAAAGGAGCTGCACTGACAGGAAACTCAGTGACTCTGTCCTGTACACTGAAGCTGCAGTCTGCTGGATGGAAGTTTTACTGGATCAAACCCACACAgagcactgagactgagactgaaacacactccTACACCATCAGCTCAGTTACAGTCTCAGATGGAGGTCAGTACAAGTGCAGAGCTGGAAGAGGAAACCCagtctactacacacactacagtgatgCACTCTGGGTAAAAGTTACTGagagTCCTAAACCTGTGGTGATTATAAAGCCTGATACACAGGtgttcagaggagagagagtgacttTCAGGTGtgacatacagagaggaggagacactGAGTGGACATACAGCTGGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU72775 lncRNA downstream 121786 8728354 ~ 8738480 (-) True G61445
TU72768 lncRNA downstream 181266 8672610 ~ 8679000 (-) False LOC113526752
TU72583 lncRNA downstream 268310 8588091 ~ 8591956 (-) False LOC113526753
TU72604 lncRNA downstream 334766 8522890 ~ 8525500 (-) False G61310
TU72800 lncRNA upstream 17451 8879197 ~ 8880736 (-) True G61464
XR_004578042.1 lncRNA upstream 26411 8888157 ~ 8893055 (-) True LOC117597151
TU72814 lncRNA upstream 73959 8935705 ~ 8936146 (-) False LOC113526752
TU72815 lncRNA upstream 74528 8936274 ~ 9152458 (-) False LOC113526752
XR_004578149.1 lncRNA upstream 132149 8993895 ~ 8994106 (-) True LOC117597240
XM_034303895.1 mRNA downstream 264641 8572259 ~ 8595625 (-) False LOC113526753
XM_034303894.1 mRNA downstream 281416 8572259 ~ 8578850 (-) False LOC113526753
XM_034303898.1 mRNA downstream 281416 8576612 ~ 8578850 (-) False LOC113526753
XM_034303896.1 mRNA downstream 284772 8571496 ~ 8575494 (-) True LOC113526753
XM_026914282.2 mRNA downstream 292278 8564114 ~ 8567988 (-) True LOC113526862
XM_034303885.1 mRNA upstream 55628 8917374 ~ 8924937 (-) False LOC113524717
XM_034303886.1 mRNA upstream 55628 8917374 ~ 8924937 (-) True LOC113524717
XM_026936304.2 mRNA upstream 453103 9314849 ~ 9327431 (-) True LOC113540087
XM_026936305.2 mRNA upstream 453103 9314849 ~ 9327324 (-) False LOC113540087
XM_026936307.2 mRNA upstream 453103 9314849 ~ 9322601 (-) False LOC113540087
XR_004578041.1 other downstream 281416 8575506 ~ 8578850 (-) False LOC113526753
TU71817 other downstream 1961039 6882469 ~ 6899227 (-) False LOC117597002
trnae-cuc_12 other downstream 2416451 6443744 ~ 6443815 (-) True trnae-cuc_12
trnak-cuu_3 other downstream 2679307 6180887 ~ 6180959 (-) True trnak-cuu_3
TU71184 other downstream 2900721 5900249 ~ 5959545 (-) False G60166
TU72820 other upstream 121488 8983234 ~ 8984453 (-) True G61478
XR_003403995.2 other upstream 453103 9314849 ~ 9327431 (-) False LOC113540087
TU72884 other upstream 476080 9337826 ~ 9338745 (-) True G61537
TU73323 other upstream 664828 9526574 ~ 9528803 (-) False LOC113526752
TU73432 other upstream 914532 9776278 ~ 9805318 (-) True G61972

Expression Profile