RNA id: TU72864


Basic Information

Item Value
RNA id TU72864
length 2245
lncRNA type intronic
GC content 0.43
exon number 2
gene id G61519
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 9314859 ~ 9317134 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CCATTTTCATAAGTTTTTATTTCAAAGATTCACTTTGTATAATTCTCTTTGCTCCCAAACCTTTGACTGGGCTTATGAATTCACATGTCCTTTAAACACACAttgcattctttaataaattgcaCTTATATAATAATGTGCACTTCGTATTGGTTGTATGACATTTGTTACATACAGCAGCATTATTCTGTAGTTGCAGCCAGCTTCGTTttctaaaatagaaaataaatactttacTTTTAATGCTGTTTATCAGTCTTGTAAGAATTTCATGGTAGGAATGTAAGGCACTTTTGGTAAGACTGAAGAACAATTCTCAACTATAACTTGATTTTAAACAGTACATAACAACTATAATTTGATTTCAAACAGTACATAACAGTACATATTAAAGTGAACACTGACCTGTAGGGGAAACACTGTGTAAGCAAACTCCTAGCTAGTAACTGCTTTACTTTTCAGTAATTCTGGTGGTTTCTGCTTGAGTgtatatgcaaaaataaaatcatgtggtCTCTGACACCATTTGATTTCTTGCATCTCATCTCAATGAACAGATCACGCACGTGTAAAAGTACATTTCTCTCTTATACAGAGCTCAAATGTCTGCTTGTACATTAATTTTTCCTCGTTTCTTCCTTCTGGCTTTCCTCTTCCGACATCTTTTCTGCTGTTCTTCATCAAAGTCGGACTCGCAACTCTCCATCTCAGCATCAGCAGTAGAGTGCATTTTTCTTTGCCTTCTAAGCTGATCTTTGTTCCTTATGGGTCTACCGATCTGTTTGCTCTCCTCTGCTGGCACACAGCTACAGTTGATGCCATGTTGTCTCTGCCGGTGGTTCTTCAGGCTGATGTTGTGATTAAACGATTCTCCACAATGCTCACACAAGAAGGGTTTCTCCCCTGTGTGGAGACGCATGTGGGACTTCAAGTGTCCGTCCTGGTTGAAGGAACggtcacacacctcacacttgTAAGGTTTCTCCCCTGAGTGTATGCGCAAGTGTCTCTCATATCTGTGAAGCGCGGTAAATTTCCTATTGCATGTGCTGCAGATGTATTTCTTTTTACCTCGGTGGGTCTTTAAATGCTCATTGCGTGTAACAAAATCTTTAAACTTTTCTGGACAGTCCGGGCACATATAGGGCAGCGTGTCTGTTTTGTGACTCTGCTCATGCTCTAGCTTGGACTGTTTTGTATCAAACGCCATCATGCAGTACTTGCAGGCGTGTTGGTAGTCTCCGTGCAAGCGACGGTAGTGCACTTTTTGTCCAATTTCTGTGAAGAAGTGCTTGTGGCACACATTACAGGAAAATGGTTTAATCTTGTACTCGCACACATGGCTCTTCTTGTTGGGGTCCGTCTCCACCctgattgttttattacagtCCTGACAGATCTTGCGCTCGTAAAGGTTTTCCGTGCCACTATGCTCAGCCATGGCATGCAGATGAAAACTCCGGACATCATTAAAACGAACGGAGAAGTCCTTTAAACTGAGGTTCTCGACACTATCGCCAGAGATGCACTCGGCACAGCAATAGTTCTTCTTGTGCCGCTGAATTGAACAGAACATTTTAGCTAGAGCTTCACAGTCTATGCACCAAATTACTGGTTTAATAGTGTTCTGAAATGGTTTCTTGGTATACTCCTCGTCAGAAGTTTCTTCATCACAGCTCTCCAAGGCCTCGTCCGAGGAGCTCGGCAGGTACTCATCCGAATCGTCTTGCTGTCCCTTTTTAGAGGACTTGTCGCTCGCTTTCTCAGCAAGCTCTTCACTTCTGTCCTCATCAGTAAATATTTCCTCATCTACACTCACATTGGCTTCGTCTGAGGAGCTCAGGAGGTACACGTCAAAAtcctcttcctgtctgtttTGAGAGGATTTGtcactttctttttcagcaAGCTCTTCACCACTGTACTCATCAATAAACAGTTCCTCATCAGCCGTCAGTGTGTCAGAAGACTCAGGGTAAGTTTGGTTAGCGGTGTCATCGCTTATCAGTGCAAGGTTTGAACCCTCTTCCTCATCACTGTCCTCATGTGTTTCCATCAGGAGACTCAGCTCCTCCTCCCTCACATTCTCGTCATGCTCCTCTCTCACTGAGATGGAATCCTCAGCAGCCTGAGCATTGTCCTCATATGTCAGCTTTGGAGACTCATCAGACGCGTGTTCCTGGTCAACAGTCACAGGTATGCTATCAAATGACGGCCCACAAGCATCGCCACATGGCGAACACTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU72737 lncRNA upstream 71704 9241937 ~ 9243155 (+) False LOC113539869
XR_004578047.1 lncRNA upstream 145380 9167556 ~ 9169479 (+) True LOC117597154
TU72700 lncRNA upstream 264335 8999522 ~ 9050524 (+) True G61377
XR_004578044.1 lncRNA upstream 399018 8910787 ~ 8915841 (+) True LOC113524706
TU72682 lncRNA upstream 399875 8910660 ~ 8914984 (+) False LOC113524706
TU72865 lncRNA downstream 3027 9320161 ~ 9322444 (+) True G61520
XR_003404092.2 lncRNA downstream 16209 9333343 ~ 9333549 (+) True LOC113540718
TU72881 lncRNA downstream 17605 9334739 ~ 9335250 (+) True G61534
TU72883 lncRNA downstream 20742 9337876 ~ 9338742 (+) True G61536
XR_004578133.1 lncRNA downstream 24625 9341759 ~ 9341972 (+) True LOC117597225
XM_034303887.1 mRNA upstream 323407 8987729 ~ 8991452 (+) True LOC117597148
XM_034303888.1 mRNA upstream 323407 8987729 ~ 8991452 (+) False LOC117597148
XM_034303891.1 mRNA upstream 323407 8987729 ~ 8991452 (+) False LOC117597148
XM_034303890.1 mRNA upstream 323407 8987729 ~ 8991452 (+) False LOC117597148
XM_034303899.1 mRNA upstream 478288 8834823 ~ 8836571 (+) True LOC117597150
XM_026936309.2 mRNA downstream 12201 9329335 ~ 9332782 (+) True LOC113540089
XM_026937204.2 mRNA downstream 111591 9428725 ~ 9434604 (+) True pnp5a
XM_026937201.2 mRNA downstream 310614 9627748 ~ 9641910 (+) False sf3b2
XM_026937200.2 mRNA downstream 310615 9627749 ~ 9641910 (+) True sf3b2
XM_034303599.1 mRNA downstream 332170 9649304 ~ 9707936 (+) True LOC113539871
TU72678 other upstream 418130 8894470 ~ 8896729 (+) True G61359
XR_004578049.1 other upstream 590419 8695352 ~ 8724440 (+) True LOC117597156
XR_003402765.2 other upstream 1252020 8056056 ~ 8062839 (+) False LOC113526345
XR_004578001.1 other upstream 2718298 6595126 ~ 6596561 (+) False LOC117597080
trnar-ucu_1 other upstream 2884282 6430486 ~ 6430577 (+) True trnar-ucu_1
XR_004578067.1 other downstream 441326 9758460 ~ 9774049 (+) False rbm14b
XR_003403991.2 other downstream 490187 9807321 ~ 9832280 (+) False gal3st3
XR_004578013.1 other downstream 543760 9860894 ~ 9881226 (+) False si:ch211-168d1.3
XR_004578014.1 other downstream 543760 9860894 ~ 9881226 (+) False si:ch211-168d1.3
trnas-gcu other downstream 595263 9912397 ~ 9912478 (+) True trnas-gcu

Expression Profile