RNA id: TU72884


Basic Information

Item Value
RNA id TU72884
length 920
RNA type TUCP
GC content 0.57
exon number 1
gene id G61537
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 9337826 ~ 9338745 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tgaggaaggaggccatcgaggtggtccctcctcacgacagggagtcagggttctacagccggtacttcattgttcccaagaaggggggagggctgcgtcccattttggacttgcggcaattgaacctctcagtcgctcgactgaagttcaggatgcttacggtcactcaggtcgtgtctcagatcaggtccgaggactggttcgtcacgatcgacctaaaagatgcgtatttccacatctccatccttcccccgcacaggaagttcctgaggttcgctttcgggggcgaagcttaccagtatcgggttcttcccttcggcctagcactctcaccccgcaccttcacgaagtgcgtggatgctgccctggctcctatgcgactacagggcatccgcatactgaactatatcgacgactggttgattttagctcattcagagcagatggcggctcggcatcgagatgccgttctcgcccatatgaaggaactggggttaagactaaacgccgagaaaagcgtgctttctccagctcagagaaccgcttatctaggcgtgtgtgggggattcgaccacgatgcaggcacgtttgtctcctgctcggatcgagtcggtcctcacagcggtcgcgagagtgaaagtaggccggtcactcactgtaaagcagtttcagagactgctgggcctattggcagctgcgtccaacgtgataccgtttggcctgctgcacatgagacccctacagtggtggctcaagaccagggggtttttccgaaacagaggaaacccgctccgcatgatcaaggtcacgcgacgatgccgccgtgccttagctgtgtggagagaacctgggttcttgtctcagggcccggtcctgggagctcctggtcgccgcgtagtgctagcgacggatgcgtccct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU72863 lncRNA downstream 24807 9312797 ~ 9313019 (-) True G61518
TU72841 lncRNA downstream 178711 9151418 ~ 9159115 (-) True G61496
TU72836 lncRNA downstream 212518 9120761 ~ 9125308 (-) True G61492
XR_004578045.1 lncRNA downstream 227861 9107528 ~ 9109965 (-) True LOC117597152
TU72833 lncRNA downstream 240952 9088707 ~ 9096874 (-) True G61489
TU73304 lncRNA upstream 90049 9428794 ~ 9430832 (-) True G61876
TU73311 lncRNA upstream 109770 9448515 ~ 9454706 (-) True G61881
XR_004578142.1 lncRNA upstream 160974 9499719 ~ 9499931 (-) True LOC117597234
XR_004578141.1 lncRNA upstream 164317 9503062 ~ 9503274 (-) True LOC117597233
XR_004578120.1 lncRNA upstream 167699 9506444 ~ 9506654 (-) True LOC117597212
XM_026936304.2 mRNA downstream 10395 9314849 ~ 9327431 (-) True LOC113540087
XM_026936305.2 mRNA downstream 10502 9314849 ~ 9327324 (-) False LOC113540087
XM_026936307.2 mRNA downstream 15225 9314849 ~ 9322601 (-) False LOC113540087
XM_026936306.2 mRNA downstream 15225 9314849 ~ 9322601 (-) False LOC113540087
XM_034303876.1 mRNA downstream 15374 9314849 ~ 9322452 (-) False LOC113540087
XM_034303893.1 mRNA upstream 29977 9368722 ~ 9377012 (-) True LOC117597149
XM_034303892.1 mRNA upstream 31919 9370664 ~ 9377012 (-) False LOC117597149
XM_026936209.2 mRNA upstream 45240 9383985 ~ 9389481 (-) False LOC113540032
XM_026936210.2 mRNA upstream 45240 9383985 ~ 9388099 (-) True LOC113540032
XM_026935959.2 mRNA upstream 52258 9391003 ~ 9412913 (-) True kcnj10a
XR_003403995.2 other downstream 10395 9314849 ~ 9327431 (-) False LOC113540087
TU72820 other downstream 353373 8983234 ~ 8984453 (-) True G61478
XR_004578041.1 other downstream 758976 8575506 ~ 8578850 (-) False LOC113526753
TU71817 other downstream 2438599 6882469 ~ 6899227 (-) False LOC117597002
trnae-cuc_12 other downstream 2894011 6443744 ~ 6443815 (-) True trnae-cuc_12
TU73323 other upstream 187829 9526574 ~ 9528803 (-) False LOC113526752
TU73432 other upstream 437533 9776278 ~ 9805318 (-) True G61972
TU73337 other upstream 689242 10027987 ~ 10037575 (-) False G61900
trnan-guu other upstream 1135651 10474396 ~ 10474470 (-) True trnan-guu
trnan-guu_1 other upstream 1136878 10475623 ~ 10475696 (-) True trnan-guu_1

Expression Profile