RNA id: TU73127


Basic Information

Item Value
RNA id TU73127
length 2977
lncRNA type inter_gene
GC content 0.37
exon number 5
gene id LOC113540370
representative False

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 10024585 ~ 10096068 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AGAATATTCAGACATTGGAATTGGAatgtcaaaaaaattaaatatcctaaataaatgaaacataaataaaataaaaccacaaaatgaaaacaacaacaaaaatggactgtaaaaaaatattgtgaattCTTTATGCTTTAATTATTCATTGTCTGTGTTTTAGTACGTCATTATGGAAAGAGCGTATTCACAGTGTGACTTGCCATTCTACCTAGACCGTTAAGTTCACTTGTGCATTTGCATCATTTTGTGCAGAAGCAAGTTAtagtaatacatttatgttgtgtatatgtctgaTTAATCTCATATGTGTATAGGATGCGTTTGGGTGAGTTAATTAACCCACTAGTGAAGCGCTTCAGTTTACTGGTGTTGATTCactgttcagcttcagctcaTGTGGCTTAAGCGGCTCAATCCCTGACATTATTGACTATGACAGGATTATTTGAAACACTAGAActattctttctattttttttcttcttcaaaaaacatTGTTAATGCATTGTTAATATCTTGCATGCCATTTTTCAACAGAATGTAAGTATGTAGAGAGAGACTTTTTGTTACATTTGAGGATGCATTTAATGCATcagttttgcatatttacatgttttaaaaccCCTCAGACTCTCCACCCTCCCACCCAAAAACCCCAAACCCCTTCAGTCTTAAACTGATTTCAATCCATAGATCCATATGAAAGGCCGTGATCCAGTTTAAAGAGTCTTTCCTCTTGCTGATGTCCATTTTCTGAGTCTCAGTCTTCTGCTTGGTGAGAGCGCTTTTcgttttttgcagtgtgttttgcaAGGTTTCTGAAGTGTCTGAAAATCTTGGCTGATCTGATGTGATCTCTCcgtgctgcatgtgtgtgagctgttctCCACCTGTAGCTCCTGTACTGCACACTGGCTCTTCACTCTCCTGCATcaccacattcactcattcactgctGTTCCTCACTTTCTtcactttcttccatttttctgGTCCTCAGCTCTACTGTGTTGACCTTCACATGGAAATAATCCAAACTGGTGTGAAGTTTACACGtgtggtttttagacacttcacaaGTCTTTTCACACGTAGCACGTGTGTTGAGTTTAAGGTGTCCCCCCAGGATACATTATCACGTGGTTTTCTCACGTgacttgtttattttcatgtgattccCCCCACATGATCCATTCATTATCACATGGTTAACTTTCTTTCGCGTCACAttttaatgattgtttttatgtgaccccatatttattttatgttcacAAACTTTACACGTATAGAGaacttaattttgtttctgCATGAATTTTTCCTACAGAGCATTCATTCGCGTATACGATCACATTCACACAACAGCGTTTTCACTTAATACTTCTTATACGATTTCATTGCATAGCAGGAAGATCCACTTTACTATCTTACCTTccttattaataaaacaaaacttaaaGACAAAAAcgcaaaacaaattaaaaaacacGCTACGAAAACTCGTTGAGTAAGTATCTATTATTACCAATCCAATAACAATCACTCTGATCATGTACTCTTCCTCTCACATTTCCTAAGAAATGAAGAACGTTCATCAATGATTAAAACTCATGAACGAATCATTAGTTTCAACCCGATTCACGCTCAGAAAAGCACATCAGACCTCGTCATCGTGATTAGAGAGACGTAACGCtttcaaatcacatttcctAGTTAGAGACTATAGAAATGATCCCTGAAAGTATAGTCTTAACCTCTCACTTCCTCAGACACTCGAGCACTTCAAATATCACACAGATCCTGAAGATGGCAGATTTATGattctacacacaacacacatgaaAATGAACAGCTATCCATGTAGAGTATGGTAAAAACAAAGAAGTTTTGAATTCACATCgaataaaagcagaaaatcgtttttttttaattgaaatatataaatatcccCCACCATGCTTTGCGGCATGATTTGTAATTTGAACTTATTCAGCTTTCATTGGTGCACGCAGACTCACGTGGTCTCGCCCCtttaaaaagatgttttaaCTGGCTAATGGCGGCACCGCGCAGCTGAGTTTCCATTATACGTTTAAAACATACTCTTTCTCACACTGTTAATATGTTAACAAATATACGggattattttcttcttattatttttctttattttcggGAACGGAATTGAAACGGAAGTACGTTTGTTAAATAAGACCGCCGGAAACTAATGATCTATTTCATGTTCCGGGCTGCCGAAGACTCGCGGCTTTAATGATAACAAATTAGAGTGGGAGCCTCTAGGAAGGATTTCTACACTGCGCAGGCTGTGTTGTGGGATCACTCTGGACTCTAGCTTCAAACACCTGCAGTGACTGTTGTAACCTTTTCCAAGAGGTTGTATAGCTGAaggaatataaatatttaaaacagtttaCTGAAATCATTATACATGCAGTGGAATACCATGGAAGCAGAAGAGCTGGCTCAAACACCGTATTAGCTGACACGTGAGTCAGACAGTGAGATTTCCTGAAACAGCGAGTTAGTGTGAAATGTGACAACTGATGCTGTCAGCAATGAACCTCTTTACATATGCACTATGTGAGTATGTGTAAGGCAGAACAGGGTGagtatataaaacaaaattgttCAGACAAAATGTCACAATCATTgggaaatgtaatttaatgctGAAAGTCACACAAAAAAGCAGATGTTAGCATAATATTGAGCAATAATTGTGTTGAGTCAGAATTCAGAGTTAGTTCATTAGGACTTCCTGTTCCCTTCCATTCTAGGACAAGCTACAATTCAATCACATTTAGCAATTTCTTATGACTGCATTAGTCAATATCAGCACTACTTGATTGTTAAGCAGACACAGAAATAAGATAAAAGTGTATTTCATAGtcaaatatttcattcatatttgtagtttccaaaaatgaatataaatggtTTGTTAGGTAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU73068 lncRNA upstream 55685 9881068 ~ 9968900 (+) True G61689
TU73062 lncRNA upstream 55756 9881068 ~ 9968829 (+) False G61689
TU73079 lncRNA upstream 105802 9914235 ~ 9918783 (+) True G61696
TU73080 lncRNA upstream 107207 9914235 ~ 9917378 (+) False G61696
TU73000 lncRNA upstream 431842 9578364 ~ 9592743 (+) True G61638
TU73179 lncRNA downstream 92583 10165529 ~ 10297564 (+) True G61785
TU73180 lncRNA downstream 151176 10224122 ~ 10266279 (+) False G61786
XR_004577941.1 lncRNA downstream 216928 10289874 ~ 10290684 (+) True LOC117596987
TU73244 lncRNA downstream 284868 10357814 ~ 10358964 (+) True G61842
TU73272 lncRNA downstream 401822 10474768 ~ 10486042 (+) True trnak-cuu_13
XM_026936955.2 mRNA upstream 27537 9992956 ~ 9997048 (+) True ino80b
XM_026936956.2 mRNA upstream 27537 9992956 ~ 9997048 (+) False ino80b
XM_034303761.1 mRNA upstream 57753 9940656 ~ 9966832 (+) False clcn3
XM_034303828.1 mRNA downstream 150836 10223782 ~ 10224603 (+) True LOC117597106
XM_034303251.1 mRNA downstream 163806 10236752 ~ 10266758 (+) False LOC113538341
XM_034303250.1 mRNA downstream 175591 10248537 ~ 10266758 (+) True LOC113538341
XM_034303830.1 mRNA downstream 197897 10270843 ~ 10280812 (+) True LOC117597107
XM_026936741.2 mRNA downstream 290044 10362990 ~ 10370654 (+) True LOC113540310
trnas-gcu other upstream 112107 9912397 ~ 9912478 (+) True trnas-gcu
XR_004578013.1 other upstream 143359 9860894 ~ 9881226 (+) False si:ch211-168d1.3
XR_004578014.1 other upstream 143359 9860894 ~ 9881226 (+) False si:ch211-168d1.3
XR_003403991.2 other upstream 192305 9807321 ~ 9832280 (+) False gal3st3
XR_004578067.1 other upstream 250536 9758460 ~ 9774049 (+) False rbm14b
TU73183 other downstream 94900 10167846 ~ 10266279 (+) True G61786
trnak-cuu_4 other downstream 401672 10474618 ~ 10474690 (+) True trnak-cuu_4
trnak-cuu_5 other downstream 402911 10475857 ~ 10475929 (+) True trnak-cuu_5
trnak-cuu_6 other downstream 404143 10477089 ~ 10477162 (+) True trnak-cuu_6
trnak-cuu_7 other downstream 405356 10478302 ~ 10478374 (+) True trnak-cuu_7

Expression Profile